Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

OR10A7 (olfactory receptor family 10 subfamily A member 7)

Identity

Alias_namesolfactory receptor, family 10, subfamily A, member 7
Other aliasOR12-6
HGNC (Hugo) OR10A7
LocusID (NCBI) 121364
Atlas_Id 71144
Location 12q13.2  [Link to chromosome band 12q13]
Location_base_pair Starts at 55221025 and ends at 55221975 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OR10A7   15329
Cards
Entrez_Gene (NCBI)OR10A7  121364  olfactory receptor family 10 subfamily A member 7
AliasesOR12-6
GeneCards (Weizmann)OR10A7
Ensembl hg19 (Hinxton)ENSG00000179919 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000179919 [Gene_View]  chr12:55221025-55221975 [Contig_View]  OR10A7 [Vega]
ICGC DataPortalENSG00000179919
TCGA cBioPortalOR10A7
AceView (NCBI)OR10A7
Genatlas (Paris)OR10A7
WikiGenes121364
SOURCE (Princeton)OR10A7
Genetics Home Reference (NIH)OR10A7
Genomic and cartography
GoldenPath hg38 (UCSC)OR10A7  -     chr12:55221025-55221975 +  12q13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OR10A7  -     12q13.2   [Description]    (hg19-Feb_2009)
EnsemblOR10A7 - 12q13.2 [CytoView hg19]  OR10A7 - 12q13.2 [CytoView hg38]
Mapping of homologs : NCBIOR10A7 [Mapview hg19]  OR10A7 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001005280
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OR10A7
Cluster EST : UnigeneHs.554557 [ NCBI ]
CGAP (NCI)Hs.554557
Alternative Splicing GalleryENSG00000179919
Gene ExpressionOR10A7 [ NCBI-GEO ]   OR10A7 [ EBI - ARRAY_EXPRESS ]   OR10A7 [ SEEK ]   OR10A7 [ MEM ]
Gene Expression Viewer (FireBrowse)OR10A7 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)121364
GTEX Portal (Tissue expression)OR10A7
Human Protein AtlasENSG00000179919-OR10A7 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NGE5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NGE5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NGE5
Splice isoforms : SwissVarQ8NGE5
PhosPhoSitePlusQ8NGE5
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OR10A7
DMDM Disease mutations121364
Blocks (Seattle)OR10A7
SuperfamilyQ8NGE5
Human Protein Atlas [tissue]ENSG00000179919-OR10A7 [tissue]
Peptide AtlasQ8NGE5
HPRD14883
IPIIPI00168993   
Protein Interaction databases
DIP (DOE-UCLA)Q8NGE5
IntAct (EBI)Q8NGE5
FunCoupENSG00000179919
BioGRIDOR10A7
STRING (EMBL)OR10A7
ZODIACOR10A7
Ontologies - Pathways
QuickGOQ8NGE5
Ontology : AmiGOG-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  sensory perception of smell  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBIG-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  sensory perception of smell  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Pathways : KEGGOlfactory transduction   
NDEx NetworkOR10A7
Atlas of Cancer Signalling NetworkOR10A7
Wikipedia pathwaysOR10A7
Orthology - Evolution
OrthoDB121364
GeneTree (enSembl)ENSG00000179919
Phylogenetic Trees/Animal Genes : TreeFamOR10A7
HOVERGENQ8NGE5
HOGENOMQ8NGE5
Homologs : HomoloGeneOR10A7
Homology/Alignments : Family Browser (UCSC)OR10A7
Gene fusions - Rearrangements
Fusion: Tumor Portal OR10A7
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR10A7 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR10A7
dbVarOR10A7
ClinVarOR10A7
1000_GenomesOR10A7 
Exome Variant ServerOR10A7
ExAC (Exome Aggregation Consortium)ENSG00000179919
GNOMAD BrowserENSG00000179919
Genetic variants : HAPMAP121364
Genomic Variants (DGV)OR10A7 [DGVbeta]
DECIPHEROR10A7 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOR10A7 
Mutations
ICGC Data PortalOR10A7 
TCGA Data PortalOR10A7 
Broad Tumor PortalOR10A7
OASIS PortalOR10A7 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR10A7  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOR10A7
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR10A7
DgiDB (Drug Gene Interaction Database)OR10A7
DoCM (Curated mutations)OR10A7 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR10A7 (select a term)
intoGenOR10A7
Cancer3DOR10A7(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenOR10A7
Genetic Testing Registry OR10A7
NextProtQ8NGE5 [Medical]
TSGene121364
GENETestsOR10A7
Target ValidationOR10A7
Huge Navigator OR10A7 [HugePedia]
snp3D : Map Gene to Disease121364
BioCentury BCIQOR10A7
ClinGenOR10A7
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD121364
Chemical/Pharm GKB GenePA31955
Clinical trialOR10A7
Miscellaneous
canSAR (ICR)OR10A7 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR10A7
EVEXOR10A7
GoPubMedOR10A7
iHOPOR10A7
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 12:19:56 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.