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OR10C1 (olfactory receptor family 10 subfamily C member 1 (gene/pseudogene))

Identity

Alias_namesOR10C2
olfactory receptor, family 10, subfamily C, member 2
olfactory receptor, family 10, subfamily C, member 1
olfactory receptor, family 10, subfamily C, member 1 (gene/pseudogene)
Alias_symbol (synonym)hs6M1-17
OR10C1P
Other aliasOR6-31
HGNC (Hugo) OR10C1
LocusID (NCBI) 442194
Atlas_Id 71147
Location 6p22.1  [Link to chromosome band 6p22]
Location_base_pair Starts at 29439939 and ends at 29440977 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OR10C1   8165
Cards
Entrez_Gene (NCBI)OR10C1  442194  olfactory receptor family 10 subfamily C member 1 (gene/pseudogene)
AliasesOR10C1P; OR10C2; OR6-31; hs6M1-17
GeneCards (Weizmann)OR10C1
Ensembl hg19 (Hinxton)ENSG00000206474 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000206474 [Gene_View]  ENSG00000206474 [Sequence]  chr6:29439939-29440977 [Contig_View]  OR10C1 [Vega]
ICGC DataPortalENSG00000206474
TCGA cBioPortalOR10C1
AceView (NCBI)OR10C1
Genatlas (Paris)OR10C1
WikiGenes442194
SOURCE (Princeton)OR10C1
Genetics Home Reference (NIH)OR10C1
Genomic and cartography
GoldenPath hg38 (UCSC)OR10C1  -     chr6:29439939-29440977 +  6p22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OR10C1  -     6p22.1   [Description]    (hg19-Feb_2009)
EnsemblOR10C1 - 6p22.1 [CytoView hg19]  OR10C1 - 6p22.1 [CytoView hg38]
Mapping of homologs : NCBIOR10C1 [Mapview hg19]  OR10C1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AJ459860 BC136996 BC136997
RefSeq transcript (Entrez)NM_013941
RefSeq genomic (Entrez)NC_000006 NC_018917 NT_113891 NT_167244 NT_167245 NT_167246 NT_167247 NT_167248 NT_167249
Consensus coding sequences : CCDS (NCBI)OR10C1
Cluster EST : UnigeneHs.631997 [ NCBI ]
CGAP (NCI)Hs.631997
Alternative Splicing GalleryENSG00000206474
Gene ExpressionOR10C1 [ NCBI-GEO ]   OR10C1 [ EBI - ARRAY_EXPRESS ]   OR10C1 [ SEEK ]   OR10C1 [ MEM ]
Gene Expression Viewer (FireBrowse)OR10C1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)442194
GTEX Portal (Tissue expression)OR10C1
Human Protein AtlasENSG00000206474-OR10C1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96KK4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96KK4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96KK4
Splice isoforms : SwissVarQ96KK4
PhosPhoSitePlusQ96KK4
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OR10C1
DMDM Disease mutations442194
Blocks (Seattle)OR10C1
SuperfamilyQ96KK4
Human Protein Atlas [tissue]ENSG00000206474-OR10C1 [tissue]
Peptide AtlasQ96KK4
HPRD14886
IPIIPI00064656   IPI00903329   IPI00964569   IPI00892855   
Protein Interaction databases
DIP (DOE-UCLA)Q96KK4
IntAct (EBI)Q96KK4
FunCoupENSG00000206474
BioGRIDOR10C1
STRING (EMBL)OR10C1
ZODIACOR10C1
Ontologies - Pathways
QuickGOQ96KK4
Ontology : AmiGOG-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  sensory perception of smell  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBIG-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  sensory perception of smell  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
NDEx NetworkOR10C1
Atlas of Cancer Signalling NetworkOR10C1
Wikipedia pathwaysOR10C1
Orthology - Evolution
OrthoDB442194
GeneTree (enSembl)ENSG00000206474
Phylogenetic Trees/Animal Genes : TreeFamOR10C1
HOVERGENQ96KK4
HOGENOMQ96KK4
Homologs : HomoloGeneOR10C1
Homology/Alignments : Family Browser (UCSC)OR10C1
Gene fusions - Rearrangements
Fusion : QuiverOR10C1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR10C1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR10C1
dbVarOR10C1
ClinVarOR10C1
1000_GenomesOR10C1 
Exome Variant ServerOR10C1
ExAC (Exome Aggregation Consortium)ENSG00000206474
GNOMAD BrowserENSG00000206474
Varsome BrowserOR10C1
Genetic variants : HAPMAP442194
Genomic Variants (DGV)OR10C1 [DGVbeta]
DECIPHEROR10C1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOR10C1 
Mutations
ICGC Data PortalOR10C1 
TCGA Data PortalOR10C1 
Broad Tumor PortalOR10C1
OASIS PortalOR10C1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR10C1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOR10C1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR10C1
DgiDB (Drug Gene Interaction Database)OR10C1
DoCM (Curated mutations)OR10C1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR10C1 (select a term)
intoGenOR10C1
Cancer3DOR10C1(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETOR10C1
MedgenOR10C1
Genetic Testing Registry OR10C1
NextProtQ96KK4 [Medical]
TSGene442194
GENETestsOR10C1
Target ValidationOR10C1
Huge Navigator OR10C1 [HugePedia]
snp3D : Map Gene to Disease442194
BioCentury BCIQOR10C1
ClinGenOR10C1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD442194
Chemical/Pharm GKB GenePA31962
Clinical trialOR10C1
Miscellaneous
canSAR (ICR)OR10C1 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR10C1
EVEXOR10C1
GoPubMedOR10C1
iHOPOR10C1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 14:21:04 CEST 2018

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