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OR10J1 (olfactory receptor, family 10, subfamily J, member 1)

Identity

Alias_namesolfactory receptor, family 10, subfamily J, member 1
Alias_symbol (synonym)HGMP07J
HSHGMP07J
Other alias
HGNC (Hugo) OR10J1
LocusID (NCBI) 26476
Atlas_Id 71161
Location 1q23.2  [Link to chromosome band 1q23]
Location_base_pair Starts at 159409512 and ends at 159410600 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OR10J1   8175
Cards
Entrez_Gene (NCBI)OR10J1  26476  olfactory receptor, family 10, subfamily J, member 1
AliasesHGMP07J; HSHGMP07J
GeneCards (Weizmann)OR10J1
Ensembl hg19 (Hinxton)ENSG00000196184 [Gene_View]  chr1:159409512-159410600 [Contig_View]  OR10J1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000196184 [Gene_View]  chr1:159409512-159410600 [Contig_View]  OR10J1 [Vega]
ICGC DataPortalENSG00000196184
TCGA cBioPortalOR10J1
AceView (NCBI)OR10J1
Genatlas (Paris)OR10J1
WikiGenes26476
SOURCE (Princeton)OR10J1
Genetics Home Reference (NIH)OR10J1
Genomic and cartography
GoldenPath hg19 (UCSC)OR10J1  -     chr1:159409512-159410600 +  1q23.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)OR10J1  -     1q23.2   [Description]    (hg38-Dec_2013)
EnsemblOR10J1 - 1q23.2 [CytoView hg19]  OR10J1 - 1q23.2 [CytoView hg38]
Mapping of homologs : NCBIOR10J1 [Mapview hg19]  OR10J1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC069150 BC112290 BC112292
RefSeq transcript (Entrez)NM_012351
RefSeq genomic (Entrez)NC_000001 NC_018912 NT_004487 NW_004929293
Consensus coding sequences : CCDS (NCBI)OR10J1
Cluster EST : UnigeneHs.532661 [ NCBI ]
CGAP (NCI)Hs.532661
Alternative Splicing GalleryENSG00000196184
Gene ExpressionOR10J1 [ NCBI-GEO ]   OR10J1 [ EBI - ARRAY_EXPRESS ]   OR10J1 [ SEEK ]   OR10J1 [ MEM ]
Gene Expression Viewer (FireBrowse)OR10J1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)26476
GTEX Portal (Tissue expression)OR10J1
Protein : pattern, domain, 3D structure
UniProt/SwissProtP30954   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP30954  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP30954
Splice isoforms : SwissVarP30954
PhosPhoSitePlusP30954
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)7tm_1 (PF00001)   
Domain families : Pfam (NCBI)pfam00001   
Conserved Domain (NCBI)OR10J1
DMDM Disease mutations26476
Blocks (Seattle)OR10J1
SuperfamilyP30954
Human Protein AtlasENSG00000196184
Peptide AtlasP30954
HPRD17671
IPIIPI00028118   
Protein Interaction databases
DIP (DOE-UCLA)P30954
IntAct (EBI)P30954
FunCoupENSG00000196184
BioGRIDOR10J1
STRING (EMBL)OR10J1
ZODIACOR10J1
Ontologies - Pathways
QuickGOP30954
Ontology : AmiGOG-protein coupled receptor activity  olfactory receptor activity  odorant binding  plasma membrane  integral component of plasma membrane  G-protein coupled receptor signaling pathway  single fertilization  sensory perception of chemical stimulus  sensory perception of smell  detection of chemical stimulus involved in sensory perception of smell  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBIG-protein coupled receptor activity  olfactory receptor activity  odorant binding  plasma membrane  integral component of plasma membrane  G-protein coupled receptor signaling pathway  single fertilization  sensory perception of chemical stimulus  sensory perception of smell  detection of chemical stimulus involved in sensory perception of smell  detection of chemical stimulus involved in sensory perception of smell  
Pathways : KEGGOlfactory transduction   
NDEx NetworkOR10J1
Atlas of Cancer Signalling NetworkOR10J1
Wikipedia pathwaysOR10J1
Orthology - Evolution
OrthoDB26476
GeneTree (enSembl)ENSG00000196184
Phylogenetic Trees/Animal Genes : TreeFamOR10J1
HOVERGENP30954
HOGENOMP30954
Homologs : HomoloGeneOR10J1
Homology/Alignments : Family Browser (UCSC)OR10J1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR10J1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR10J1
dbVarOR10J1
ClinVarOR10J1
1000_GenomesOR10J1 
Exome Variant ServerOR10J1
ExAC (Exome Aggregation Consortium)OR10J1 (select the gene name)
Genetic variants : HAPMAP26476
Genomic Variants (DGV)OR10J1 [DGVbeta]
DECIPHER (Syndromes)1:159409512-159410600  ENSG00000196184
CONAN: Copy Number AnalysisOR10J1 
Mutations
ICGC Data PortalOR10J1 
TCGA Data PortalOR10J1 
Broad Tumor PortalOR10J1
OASIS PortalOR10J1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR10J1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOR10J1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR10J1
DgiDB (Drug Gene Interaction Database)OR10J1
DoCM (Curated mutations)OR10J1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR10J1 (select a term)
intoGenOR10J1
Cancer3DOR10J1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenOR10J1
Genetic Testing Registry OR10J1
NextProtP30954 [Medical]
TSGene26476
GENETestsOR10J1
Huge Navigator OR10J1 [HugePedia]
snp3D : Map Gene to Disease26476
BioCentury BCIQOR10J1
ClinGenOR10J1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD26476
Chemical/Pharm GKB GenePA31982
Clinical trialOR10J1
Miscellaneous
canSAR (ICR)OR10J1 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR10J1
EVEXOR10J1
GoPubMedOR10J1
iHOPOR10J1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:36:00 CET 2017

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