Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

OR10J4 (olfactory receptor family 10 subfamily J member 4 (gene/pseudogene))

Identity

Alias_namesOR10J4P
olfactory receptor, family 10, subfamily J, member 4 pseudogene
olfactory receptor, family 10, subfamily J, member 4 (gene/pseudogene)
Alias_symbol (synonym)OST717
Other alias
HGNC (Hugo) OR10J4
LocusID (NCBI) 391121
Atlas_Id 79076
Location 1q23.2  [Link to chromosome band 1q23]
Location_base_pair Starts at 159432105 and ends at 159433236 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OR10J4   15408
Cards
Entrez_Gene (NCBI)OR10J4  391121  olfactory receptor family 10 subfamily J member 4 (gene/pseudogene)
AliasesOR10J4P;nbsp+OT717
GeneCards (Weizmann)OR10J4
Ensembl hg19 (Hinxton)ENSG00000249730 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000249730 [Gene_View]  chr1:159432105-159433236 [Contig_View]  OR10J4 [Vega]
ICGC DataPortalENSG00000249730
TCGA cBioPortalOR10J4
AceView (NCBI)OR10J4
Genatlas (Paris)OR10J4
WikiGenes391121
SOURCE (Princeton)OR10J4
Genetics Home Reference (NIH)OR10J4
Genomic and cartography
GoldenPath hg38 (UCSC)OR10J4  -     chr1:159432105-159433236 +  1q23.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OR10J4  -     1q23.2   [Description]    (hg19-Feb_2009)
EnsemblOR10J4 - 1q23.2 [CytoView hg19]  OR10J4 - 1q23.2 [CytoView hg38]
Mapping of homologs : NCBIOR10J4 [Mapview hg19]  OR10J4 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001348286
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OR10J4
Alternative Splicing GalleryENSG00000249730
Gene ExpressionOR10J4 [ NCBI-GEO ]   OR10J4 [ EBI - ARRAY_EXPRESS ]   OR10J4 [ SEEK ]   OR10J4 [ MEM ]
Gene Expression Viewer (FireBrowse)OR10J4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)391121
GTEX Portal (Tissue expression)OR10J4
Human Protein AtlasENSG00000249730-OR10J4 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP0C629   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP0C629  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP0C629
Splice isoforms : SwissVarP0C629
PhosPhoSitePlusP0C629
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OR10J4
DMDM Disease mutations391121
Blocks (Seattle)OR10J4
SuperfamilyP0C629
Human Protein Atlas [tissue]ENSG00000249730-OR10J4 [tissue]
Peptide AtlasP0C629
IPIIPI00878836   
Protein Interaction databases
DIP (DOE-UCLA)P0C629
IntAct (EBI)P0C629
FunCoupENSG00000249730
BioGRIDOR10J4
STRING (EMBL)OR10J4
ZODIACOR10J4
Ontologies - Pathways
QuickGOP0C629
Ontology : AmiGOtransmembrane signaling receptor activity  G-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBItransmembrane signaling receptor activity  G-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception  detection of chemical stimulus involved in sensory perception of smell  
NDEx NetworkOR10J4
Atlas of Cancer Signalling NetworkOR10J4
Wikipedia pathwaysOR10J4
Orthology - Evolution
OrthoDB391121
GeneTree (enSembl)ENSG00000249730
Phylogenetic Trees/Animal Genes : TreeFamOR10J4
HOVERGENP0C629
HOGENOMP0C629
Homologs : HomoloGeneOR10J4
Homology/Alignments : Family Browser (UCSC)OR10J4
Gene fusions - Rearrangements
Tumor Fusion PortalOR10J4
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR10J4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR10J4
dbVarOR10J4
ClinVarOR10J4
1000_GenomesOR10J4 
Exome Variant ServerOR10J4
ExAC (Exome Aggregation Consortium)ENSG00000249730
GNOMAD BrowserENSG00000249730
Genetic variants : HAPMAP391121
Genomic Variants (DGV)OR10J4 [DGVbeta]
DECIPHEROR10J4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOR10J4 
Mutations
ICGC Data PortalOR10J4 
TCGA Data PortalOR10J4 
Broad Tumor PortalOR10J4
OASIS PortalOR10J4 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDOR10J4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR10J4
DgiDB (Drug Gene Interaction Database)OR10J4
DoCM (Curated mutations)OR10J4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR10J4 (select a term)
intoGenOR10J4
Cancer3DOR10J4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETOR10J4
MedgenOR10J4
Genetic Testing Registry OR10J4
NextProtP0C629 [Medical]
TSGene391121
GENETestsOR10J4
Target ValidationOR10J4
Huge Navigator OR10J4 [HugePedia]
snp3D : Map Gene to Disease391121
BioCentury BCIQOR10J4
ClinGenOR10J4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD391121
Chemical/Pharm GKB GenePA31985
Clinical trialOR10J4
Miscellaneous
canSAR (ICR)OR10J4 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR10J4
EVEXOR10J4
GoPubMedOR10J4
iHOPOR10J4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:02:02 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.