Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

OR10K2 (olfactory receptor, family 10, subfamily K, member 2)

Identity

Alias_namesolfactory receptor, family 10, subfamily K, member 2
Other aliasOR1-4
HGNC (Hugo) OR10K2
LocusID (NCBI) 391107
Atlas_Id 71165
Location 1q23.1  [Link to chromosome band 1q23]
Location_base_pair Starts at 158389718 and ends at 158390656 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OR10K2   14826
Cards
Entrez_Gene (NCBI)OR10K2  391107  olfactory receptor, family 10, subfamily K, member 2
AliasesOR1-4
GeneCards (Weizmann)OR10K2
Ensembl hg19 (Hinxton)ENSG00000180708 [Gene_View]  chr1:158389718-158390656 [Contig_View]  OR10K2 [Vega]
Ensembl hg38 (Hinxton)ENSG00000180708 [Gene_View]  chr1:158389718-158390656 [Contig_View]  OR10K2 [Vega]
ICGC DataPortalENSG00000180708
TCGA cBioPortalOR10K2
AceView (NCBI)OR10K2
Genatlas (Paris)OR10K2
WikiGenes391107
SOURCE (Princeton)OR10K2
Genetics Home Reference (NIH)OR10K2
Genomic and cartography
GoldenPath hg19 (UCSC)OR10K2  -     chr1:158389718-158390656 -  1q23.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)OR10K2  -     1q23.1   [Description]    (hg38-Dec_2013)
EnsemblOR10K2 - 1q23.1 [CytoView hg19]  OR10K2 - 1q23.1 [CytoView hg38]
Mapping of homologs : NCBIOR10K2 [Mapview hg19]  OR10K2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001004476
RefSeq genomic (Entrez)NC_000001 NC_018912 NT_004487 NW_004929293
Consensus coding sequences : CCDS (NCBI)OR10K2
Cluster EST : UnigeneHs.626815 [ NCBI ]
CGAP (NCI)Hs.626815
Alternative Splicing GalleryENSG00000180708
Gene ExpressionOR10K2 [ NCBI-GEO ]   OR10K2 [ EBI - ARRAY_EXPRESS ]   OR10K2 [ SEEK ]   OR10K2 [ MEM ]
Gene Expression Viewer (FireBrowse)OR10K2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)391107
GTEX Portal (Tissue expression)OR10K2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6IF99   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6IF99  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6IF99
Splice isoforms : SwissVarQ6IF99
PhosPhoSitePlusQ6IF99
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OR10K2
DMDM Disease mutations391107
Blocks (Seattle)OR10K2
SuperfamilyQ6IF99
Human Protein AtlasENSG00000180708
Peptide AtlasQ6IF99
HPRD14894
IPIIPI00456735   IPI00745594   
Protein Interaction databases
DIP (DOE-UCLA)Q6IF99
IntAct (EBI)Q6IF99
FunCoupENSG00000180708
BioGRIDOR10K2
STRING (EMBL)OR10K2
ZODIACOR10K2
Ontologies - Pathways
QuickGOQ6IF99
Ontology : AmiGOtransmembrane signaling receptor activity  G-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBItransmembrane signaling receptor activity  G-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception  detection of chemical stimulus involved in sensory perception of smell  
Pathways : KEGGOlfactory transduction   
NDEx NetworkOR10K2
Atlas of Cancer Signalling NetworkOR10K2
Wikipedia pathwaysOR10K2
Orthology - Evolution
OrthoDB391107
GeneTree (enSembl)ENSG00000180708
Phylogenetic Trees/Animal Genes : TreeFamOR10K2
HOVERGENQ6IF99
HOGENOMQ6IF99
Homologs : HomoloGeneOR10K2
Homology/Alignments : Family Browser (UCSC)OR10K2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR10K2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR10K2
dbVarOR10K2
ClinVarOR10K2
1000_GenomesOR10K2 
Exome Variant ServerOR10K2
ExAC (Exome Aggregation Consortium)OR10K2 (select the gene name)
Genetic variants : HAPMAP391107
Genomic Variants (DGV)OR10K2 [DGVbeta]
DECIPHER (Syndromes)1:158389718-158390656  ENSG00000180708
CONAN: Copy Number AnalysisOR10K2 
Mutations
ICGC Data PortalOR10K2 
TCGA Data PortalOR10K2 
Broad Tumor PortalOR10K2
OASIS PortalOR10K2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR10K2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOR10K2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR10K2
DgiDB (Drug Gene Interaction Database)OR10K2
DoCM (Curated mutations)OR10K2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR10K2 (select a term)
intoGenOR10K2
Cancer3DOR10K2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenOR10K2
Genetic Testing Registry OR10K2
NextProtQ6IF99 [Medical]
TSGene391107
GENETestsOR10K2
Huge Navigator OR10K2 [HugePedia]
snp3D : Map Gene to Disease391107
BioCentury BCIQOR10K2
ClinGenOR10K2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD391107
Chemical/Pharm GKB GenePA31989
Clinical trialOR10K2
Miscellaneous
canSAR (ICR)OR10K2 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR10K2
EVEXOR10K2
GoPubMedOR10K2
iHOPOR10K2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:36:01 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.