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OR10S1 (olfactory receptor family 10 subfamily S member 1)

Identity

Alias_namesolfactory receptor, family 10, subfamily S, member 1
Other aliasOR11-279
HGNC (Hugo) OR10S1
LocusID (NCBI) 219873
Atlas_Id 71170
Location 11q24.1  [Link to chromosome band 11q24]
Location_base_pair Starts at 123976696 and ends at 123977691 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OR10S1   14807
Cards
Entrez_Gene (NCBI)OR10S1  219873  olfactory receptor family 10 subfamily S member 1
AliasesOR11-279
GeneCards (Weizmann)OR10S1
Ensembl hg19 (Hinxton)ENSG00000196248 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000196248 [Gene_View]  chr11:123976696-123977691 [Contig_View]  OR10S1 [Vega]
ICGC DataPortalENSG00000196248
TCGA cBioPortalOR10S1
AceView (NCBI)OR10S1
Genatlas (Paris)OR10S1
WikiGenes219873
SOURCE (Princeton)OR10S1
Genetics Home Reference (NIH)OR10S1
Genomic and cartography
GoldenPath hg38 (UCSC)OR10S1  -     chr11:123976696-123977691 -  11q24.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OR10S1  -     11q24.1   [Description]    (hg19-Feb_2009)
EnsemblOR10S1 - 11q24.1 [CytoView hg19]  OR10S1 - 11q24.1 [CytoView hg38]
Mapping of homologs : NCBIOR10S1 [Mapview hg19]  OR10S1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC137037 BC137038
RefSeq transcript (Entrez)NM_001004474
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OR10S1
Cluster EST : UnigeneHs.553637 [ NCBI ]
CGAP (NCI)Hs.553637
Alternative Splicing GalleryENSG00000196248
Gene ExpressionOR10S1 [ NCBI-GEO ]   OR10S1 [ EBI - ARRAY_EXPRESS ]   OR10S1 [ SEEK ]   OR10S1 [ MEM ]
Gene Expression Viewer (FireBrowse)OR10S1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)219873
GTEX Portal (Tissue expression)OR10S1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NGN2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NGN2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NGN2
Splice isoforms : SwissVarQ8NGN2
PhosPhoSitePlusQ8NGN2
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OR10S1
DMDM Disease mutations219873
Blocks (Seattle)OR10S1
SuperfamilyQ8NGN2
Human Protein AtlasENSG00000196248
Peptide AtlasQ8NGN2
HPRD17675
IPIIPI00979843   
Protein Interaction databases
DIP (DOE-UCLA)Q8NGN2
IntAct (EBI)Q8NGN2
FunCoupENSG00000196248
BioGRIDOR10S1
STRING (EMBL)OR10S1
ZODIACOR10S1
Ontologies - Pathways
QuickGOQ8NGN2
Ontology : AmiGOG-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  sensory perception of smell  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBIG-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  sensory perception of smell  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Pathways : KEGGOlfactory transduction   
NDEx NetworkOR10S1
Atlas of Cancer Signalling NetworkOR10S1
Wikipedia pathwaysOR10S1
Orthology - Evolution
OrthoDB219873
GeneTree (enSembl)ENSG00000196248
Phylogenetic Trees/Animal Genes : TreeFamOR10S1
HOVERGENQ8NGN2
HOGENOMQ8NGN2
Homologs : HomoloGeneOR10S1
Homology/Alignments : Family Browser (UCSC)OR10S1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR10S1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR10S1
dbVarOR10S1
ClinVarOR10S1
1000_GenomesOR10S1 
Exome Variant ServerOR10S1
ExAC (Exome Aggregation Consortium)OR10S1 (select the gene name)
Genetic variants : HAPMAP219873
Genomic Variants (DGV)OR10S1 [DGVbeta]
DECIPHEROR10S1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOR10S1 
Mutations
ICGC Data PortalOR10S1 
TCGA Data PortalOR10S1 
Broad Tumor PortalOR10S1
OASIS PortalOR10S1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR10S1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOR10S1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR10S1
DgiDB (Drug Gene Interaction Database)OR10S1
DoCM (Curated mutations)OR10S1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR10S1 (select a term)
intoGenOR10S1
Cancer3DOR10S1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenOR10S1
Genetic Testing Registry OR10S1
NextProtQ8NGN2 [Medical]
TSGene219873
GENETestsOR10S1
Target ValidationOR10S1
Huge Navigator OR10S1 [HugePedia]
snp3D : Map Gene to Disease219873
BioCentury BCIQOR10S1
ClinGenOR10S1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD219873
Chemical/Pharm GKB GenePA31999
Clinical trialOR10S1
Miscellaneous
canSAR (ICR)OR10S1 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR10S1
EVEXOR10S1
GoPubMedOR10S1
iHOPOR10S1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:32:46 CEST 2017

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