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OR10T2 (olfactory receptor family 10 subfamily T member 2)

Identity

Alias_namesolfactory receptor, family 10, subfamily T, member 2
Other aliasOR1-3
HGNC (Hugo) OR10T2
LocusID (NCBI) 128360
Atlas_Id 71171
Location 1q23.1  [Link to chromosome band 1q23]
Location_base_pair Starts at 158398522 and ends at 158399466 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OR10T2   14816
Cards
Entrez_Gene (NCBI)OR10T2  128360  olfactory receptor family 10 subfamily T member 2
AliasesOR1-3
GeneCards (Weizmann)OR10T2
Ensembl hg19 (Hinxton)ENSG00000186306 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000186306 [Gene_View]  chr1:158398522-158399466 [Contig_View]  OR10T2 [Vega]
ICGC DataPortalENSG00000186306
TCGA cBioPortalOR10T2
AceView (NCBI)OR10T2
Genatlas (Paris)OR10T2
WikiGenes128360
SOURCE (Princeton)OR10T2
Genetics Home Reference (NIH)OR10T2
Genomic and cartography
GoldenPath hg38 (UCSC)OR10T2  -     chr1:158398522-158399466 -  1q23.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OR10T2  -     1q23.1   [Description]    (hg19-Feb_2009)
EnsemblOR10T2 - 1q23.1 [CytoView hg19]  OR10T2 - 1q23.1 [CytoView hg38]
Mapping of homologs : NCBIOR10T2 [Mapview hg19]  OR10T2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC156267 BC157047
RefSeq transcript (Entrez)NM_001004475
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OR10T2
Cluster EST : UnigeneHs.553588 [ NCBI ]
CGAP (NCI)Hs.553588
Alternative Splicing GalleryENSG00000186306
Gene ExpressionOR10T2 [ NCBI-GEO ]   OR10T2 [ EBI - ARRAY_EXPRESS ]   OR10T2 [ SEEK ]   OR10T2 [ MEM ]
Gene Expression Viewer (FireBrowse)OR10T2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)128360
GTEX Portal (Tissue expression)OR10T2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NGX3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NGX3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NGX3
Splice isoforms : SwissVarQ8NGX3
PhosPhoSitePlusQ8NGX3
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OR10T2
DMDM Disease mutations128360
Blocks (Seattle)OR10T2
SuperfamilyQ8NGX3
Human Protein AtlasENSG00000186306
Peptide AtlasQ8NGX3
HPRD14896
IPIIPI00169188   
Protein Interaction databases
DIP (DOE-UCLA)Q8NGX3
IntAct (EBI)Q8NGX3
FunCoupENSG00000186306
BioGRIDOR10T2
STRING (EMBL)OR10T2
ZODIACOR10T2
Ontologies - Pathways
QuickGOQ8NGX3
Ontology : AmiGOtransmembrane signaling receptor activity  G-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBItransmembrane signaling receptor activity  G-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception  detection of chemical stimulus involved in sensory perception of smell  
Pathways : KEGGOlfactory transduction   
NDEx NetworkOR10T2
Atlas of Cancer Signalling NetworkOR10T2
Wikipedia pathwaysOR10T2
Orthology - Evolution
OrthoDB128360
GeneTree (enSembl)ENSG00000186306
Phylogenetic Trees/Animal Genes : TreeFamOR10T2
HOVERGENQ8NGX3
HOGENOMQ8NGX3
Homologs : HomoloGeneOR10T2
Homology/Alignments : Family Browser (UCSC)OR10T2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR10T2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR10T2
dbVarOR10T2
ClinVarOR10T2
1000_GenomesOR10T2 
Exome Variant ServerOR10T2
ExAC (Exome Aggregation Consortium)OR10T2 (select the gene name)
Genetic variants : HAPMAP128360
Genomic Variants (DGV)OR10T2 [DGVbeta]
DECIPHEROR10T2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOR10T2 
Mutations
ICGC Data PortalOR10T2 
TCGA Data PortalOR10T2 
Broad Tumor PortalOR10T2
OASIS PortalOR10T2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR10T2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOR10T2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR10T2
DgiDB (Drug Gene Interaction Database)OR10T2
DoCM (Curated mutations)OR10T2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR10T2 (select a term)
intoGenOR10T2
Cancer3DOR10T2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenOR10T2
Genetic Testing Registry OR10T2
NextProtQ8NGX3 [Medical]
TSGene128360
GENETestsOR10T2
Target ValidationOR10T2
Huge Navigator OR10T2 [HugePedia]
snp3D : Map Gene to Disease128360
BioCentury BCIQOR10T2
ClinGenOR10T2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD128360
Chemical/Pharm GKB GenePA32001
Clinical trialOR10T2
Miscellaneous
canSAR (ICR)OR10T2 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR10T2
EVEXOR10T2
GoPubMedOR10T2
iHOPOR10T2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:33:46 CEST 2017

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