Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

OR10V1 (olfactory receptor family 10 subfamily V member 1)

Identity

Alias (NCBI)OR11-256
HGNC (Hugo) OR10V1
HGNC Previous nameolfactory receptor, family 10, subfamily V, member 1
LocusID (NCBI) 390201
Atlas_Id 71172
Location 11q12.1  [Link to chromosome band 11q12]
Location_base_pair Starts at 59712916 and ends at 59713845 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

Nomenclature
HGNC (Hugo)OR10V1   15136
Cards
Entrez_Gene (NCBI)OR10V1    olfactory receptor family 10 subfamily V member 1
AliasesOR11-256
GeneCards (Weizmann)OR10V1
Ensembl hg19 (Hinxton)ENSG00000172289 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000172289 [Gene_View]  ENSG00000172289 [Sequence]  chr11:59712916-59713845 [Contig_View]  OR10V1 [Vega]
ICGC DataPortalENSG00000172289
TCGA cBioPortalOR10V1
AceView (NCBI)OR10V1
Genatlas (Paris)OR10V1
SOURCE (Princeton)OR10V1
Genetics Home Reference (NIH)OR10V1
Genomic and cartography
GoldenPath hg38 (UCSC)OR10V1  -     chr11:59712916-59713845 -  11q12.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OR10V1  -     11q12.1   [Description]    (hg19-Feb_2009)
GoldenPathOR10V1 - 11q12.1 [CytoView hg19]  OR10V1 - 11q12.1 [CytoView hg38]
ImmunoBaseENSG00000172289
genome Data Viewer NCBIOR10V1 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001005324
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OR10V1
Alternative Splicing GalleryENSG00000172289
Gene ExpressionOR10V1 [ NCBI-GEO ]   OR10V1 [ EBI - ARRAY_EXPRESS ]   OR10V1 [ SEEK ]   OR10V1 [ MEM ]
Gene Expression Viewer (FireBrowse)OR10V1 [ Firebrowse - Broad ]
GenevisibleExpression of OR10V1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)390201
GTEX Portal (Tissue expression)OR10V1
Human Protein AtlasENSG00000172289-OR10V1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NGI7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NGI7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NGI7
Splice isoforms : SwissVarQ8NGI7
PhosPhoSitePlusQ8NGI7
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)7tm_4 (PF13853)   
Domain families : Pfam (NCBI)pfam13853   
Conserved Domain (NCBI)OR10V1
Blocks (Seattle)OR10V1
SuperfamilyQ8NGI7
Human Protein Atlas [tissue]ENSG00000172289-OR10V1 [tissue]
Peptide AtlasQ8NGI7
HPRD17676
IPIIPI00169029   
Protein Interaction databases
DIP (DOE-UCLA)Q8NGI7
IntAct (EBI)Q8NGI7
BioGRIDOR10V1
STRING (EMBL)OR10V1
ZODIACOR10V1
Ontologies - Pathways
QuickGOQ8NGI7
Ontology : AmiGOG protein-coupled receptor activity  olfactory receptor activity  odorant binding  plasma membrane  G protein-coupled receptor signaling pathway  sensory perception of smell  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBIG protein-coupled receptor activity  olfactory receptor activity  odorant binding  plasma membrane  G protein-coupled receptor signaling pathway  sensory perception of smell  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
NDEx NetworkOR10V1
Atlas of Cancer Signalling NetworkOR10V1
Wikipedia pathwaysOR10V1
Orthology - Evolution
OrthoDB390201
GeneTree (enSembl)ENSG00000172289
Phylogenetic Trees/Animal Genes : TreeFamOR10V1
HOGENOMQ8NGI7
Homologs : HomoloGeneOR10V1
Homology/Alignments : Family Browser (UCSC)OR10V1
Gene fusions - Rearrangements
Fusion : QuiverOR10V1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR10V1 [hg38]
dbVarOR10V1
ClinVarOR10V1
MonarchOR10V1
1000_GenomesOR10V1 
Exome Variant ServerOR10V1
GNOMAD BrowserENSG00000172289
Varsome BrowserOR10V1
Genomic Variants (DGV)OR10V1 [DGVbeta]
DECIPHEROR10V1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOR10V1 
Mutations
ICGC Data PortalOR10V1 
TCGA Data PortalOR10V1 
Broad Tumor PortalOR10V1
OASIS PortalOR10V1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR10V1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DOR10V1
Mutations and Diseases : HGMDOR10V1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR10V1
DgiDB (Drug Gene Interaction Database)OR10V1
DoCM (Curated mutations)OR10V1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR10V1 (select a term)
intoGenOR10V1
Cancer3DOR10V1(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETOR10V1
MedgenOR10V1
Genetic Testing Registry OR10V1
NextProtQ8NGI7 [Medical]
GENETestsOR10V1
Target ValidationOR10V1
Huge Navigator OR10V1 [HugePedia]
ClinGenOR10V1
Clinical trials, drugs, therapy
MyCancerGenomeOR10V1
Protein Interactions : CTD
Pharm GKB GenePA32003
Clinical trialOR10V1
Miscellaneous
canSAR (ICR)OR10V1 (select the gene name)
HarmonizomeOR10V1
DataMed IndexOR10V1
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR10V1
EVEXOR10V1
GoPubMedOR10V1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Dec 5 17:20:07 CET 2020

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.