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OR10W1 (olfactory receptor family 10 subfamily W member 1)

Identity

Alias_namesOR10W1P
olfactory receptor, family 10, subfamily W, member 1 pseudogene
olfactory receptor, family 10, subfamily W, member 1
Other aliasOR10W1Q
OR11-236
UNQ6469
HGNC (Hugo) OR10W1
LocusID (NCBI) 81341
Atlas_Id 71174
Location 11q12.1  [Link to chromosome band 11q12]
Location_base_pair Starts at 58266792 and ends at 58268260 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OR10W1   15139
Cards
Entrez_Gene (NCBI)OR10W1  81341  olfactory receptor family 10 subfamily W member 1
AliasesOR10W1P; OR10W1Q; OR11-236; UNQ6469
GeneCards (Weizmann)OR10W1
Ensembl hg19 (Hinxton)ENSG00000172772 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000172772 [Gene_View]  chr11:58266792-58268260 [Contig_View]  OR10W1 [Vega]
ICGC DataPortalENSG00000172772
TCGA cBioPortalOR10W1
AceView (NCBI)OR10W1
Genatlas (Paris)OR10W1
WikiGenes81341
SOURCE (Princeton)OR10W1
Genetics Home Reference (NIH)OR10W1
Genomic and cartography
GoldenPath hg38 (UCSC)OR10W1  -     chr11:58266792-58268260 -  11q12.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OR10W1  -     11q12.1   [Description]    (hg19-Feb_2009)
EnsemblOR10W1 - 11q12.1 [CytoView hg19]  OR10W1 - 11q12.1 [CytoView hg38]
Mapping of homologs : NCBIOR10W1 [Mapview hg19]  OR10W1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AY358251 BC132848 BC132850 HQ258168
RefSeq transcript (Entrez)NM_207374
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OR10W1
Cluster EST : UnigeneHs.531507 [ NCBI ]
CGAP (NCI)Hs.531507
Alternative Splicing GalleryENSG00000172772
Gene ExpressionOR10W1 [ NCBI-GEO ]   OR10W1 [ EBI - ARRAY_EXPRESS ]   OR10W1 [ SEEK ]   OR10W1 [ MEM ]
Gene Expression Viewer (FireBrowse)OR10W1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)81341
GTEX Portal (Tissue expression)OR10W1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NGF6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NGF6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NGF6
Splice isoforms : SwissVarQ8NGF6
PhosPhoSitePlusQ8NGF6
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OR10W1
DMDM Disease mutations81341
Blocks (Seattle)OR10W1
SuperfamilyQ8NGF6
Human Protein AtlasENSG00000172772
Peptide AtlasQ8NGF6
HPRD18269
IPIIPI00169001   
Protein Interaction databases
DIP (DOE-UCLA)Q8NGF6
IntAct (EBI)Q8NGF6
FunCoupENSG00000172772
BioGRIDOR10W1
STRING (EMBL)OR10W1
ZODIACOR10W1
Ontologies - Pathways
QuickGOQ8NGF6
Ontology : AmiGOG-protein coupled receptor activity  olfactory receptor activity  odorant binding  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBIG-protein coupled receptor activity  olfactory receptor activity  odorant binding  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Pathways : KEGGOlfactory transduction   
NDEx NetworkOR10W1
Atlas of Cancer Signalling NetworkOR10W1
Wikipedia pathwaysOR10W1
Orthology - Evolution
OrthoDB81341
GeneTree (enSembl)ENSG00000172772
Phylogenetic Trees/Animal Genes : TreeFamOR10W1
HOVERGENQ8NGF6
HOGENOMQ8NGF6
Homologs : HomoloGeneOR10W1
Homology/Alignments : Family Browser (UCSC)OR10W1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR10W1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR10W1
dbVarOR10W1
ClinVarOR10W1
1000_GenomesOR10W1 
Exome Variant ServerOR10W1
ExAC (Exome Aggregation Consortium)OR10W1 (select the gene name)
Genetic variants : HAPMAP81341
Genomic Variants (DGV)OR10W1 [DGVbeta]
DECIPHEROR10W1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOR10W1 
Mutations
ICGC Data PortalOR10W1 
TCGA Data PortalOR10W1 
Broad Tumor PortalOR10W1
OASIS PortalOR10W1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR10W1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOR10W1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR10W1
DgiDB (Drug Gene Interaction Database)OR10W1
DoCM (Curated mutations)OR10W1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR10W1 (select a term)
intoGenOR10W1
Cancer3DOR10W1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenOR10W1
Genetic Testing Registry OR10W1
NextProtQ8NGF6 [Medical]
TSGene81341
GENETestsOR10W1
Target ValidationOR10W1
Huge Navigator OR10W1 [HugePedia]
snp3D : Map Gene to Disease81341
BioCentury BCIQOR10W1
ClinGenOR10W1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD81341
Chemical/Pharm GKB GenePA32006
Clinical trialOR10W1
Miscellaneous
canSAR (ICR)OR10W1 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR10W1
EVEXOR10W1
GoPubMedOR10W1
iHOPOR10W1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:32:46 CEST 2017

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