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OR10X1 (olfactory receptor family 10 subfamily X member 1 (gene/pseudogene))

Identity

Alias_namesOR10X1P
olfactory receptor, family 10, subfamily X, member 1
olfactory receptor, family 10, subfamily X, member 1 (gene/pseudogene)
Other aliasOR1-13
OR1-14
HGNC (Hugo) OR10X1
LocusID (NCBI) 128367
Atlas_Id 71175
Location 1q23.1  [Link to chromosome band 1q23]
Location_base_pair Starts at 158578919 and ends at 158579899 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OR10X1   14995
Cards
Entrez_Gene (NCBI)OR10X1  128367  olfactory receptor family 10 subfamily X member 1 (gene/pseudogene)
AliasesOR1-13; OR1-14; OR10X1P
GeneCards (Weizmann)OR10X1
Ensembl hg19 (Hinxton)ENSG00000186400 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000186400 [Gene_View]  chr1:158578919-158579899 [Contig_View]  OR10X1 [Vega]
ICGC DataPortalENSG00000186400
TCGA cBioPortalOR10X1
AceView (NCBI)OR10X1
Genatlas (Paris)OR10X1
WikiGenes128367
SOURCE (Princeton)OR10X1
Genetics Home Reference (NIH)OR10X1
Genomic and cartography
GoldenPath hg38 (UCSC)OR10X1  -     chr1:158578919-158579899 -  1q23.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OR10X1  -     1q23.1   [Description]    (hg19-Feb_2009)
EnsemblOR10X1 - 1q23.1 [CytoView hg19]  OR10X1 - 1q23.1 [CytoView hg38]
Mapping of homologs : NCBIOR10X1 [Mapview hg19]  OR10X1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001004477
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OR10X1
Cluster EST : UnigeneHs.553589 [ NCBI ]
CGAP (NCI)Hs.553589
Alternative Splicing GalleryENSG00000186400
Gene ExpressionOR10X1 [ NCBI-GEO ]   OR10X1 [ EBI - ARRAY_EXPRESS ]   OR10X1 [ SEEK ]   OR10X1 [ MEM ]
Gene Expression Viewer (FireBrowse)OR10X1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)128367
GTEX Portal (Tissue expression)OR10X1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NGY0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NGY0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NGY0
Splice isoforms : SwissVarQ8NGY0
PhosPhoSitePlusQ8NGY0
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OR10X1
DMDM Disease mutations128367
Blocks (Seattle)OR10X1
SuperfamilyQ8NGY0
Human Protein AtlasENSG00000186400
Peptide AtlasQ8NGY0
HPRD14897
IPIIPI00169201   
Protein Interaction databases
DIP (DOE-UCLA)Q8NGY0
IntAct (EBI)Q8NGY0
FunCoupENSG00000186400
BioGRIDOR10X1
STRING (EMBL)OR10X1
ZODIACOR10X1
Ontologies - Pathways
QuickGOQ8NGY0
Ontology : AmiGOG-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBIG-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Pathways : KEGGOlfactory transduction   
NDEx NetworkOR10X1
Atlas of Cancer Signalling NetworkOR10X1
Wikipedia pathwaysOR10X1
Orthology - Evolution
OrthoDB128367
GeneTree (enSembl)ENSG00000186400
Phylogenetic Trees/Animal Genes : TreeFamOR10X1
HOVERGENQ8NGY0
HOGENOMQ8NGY0
Homologs : HomoloGeneOR10X1
Homology/Alignments : Family Browser (UCSC)OR10X1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR10X1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR10X1
dbVarOR10X1
ClinVarOR10X1
1000_GenomesOR10X1 
Exome Variant ServerOR10X1
ExAC (Exome Aggregation Consortium)OR10X1 (select the gene name)
Genetic variants : HAPMAP128367
Genomic Variants (DGV)OR10X1 [DGVbeta]
DECIPHEROR10X1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOR10X1 
Mutations
ICGC Data PortalOR10X1 
TCGA Data PortalOR10X1 
Broad Tumor PortalOR10X1
OASIS PortalOR10X1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR10X1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOR10X1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR10X1
DgiDB (Drug Gene Interaction Database)OR10X1
DoCM (Curated mutations)OR10X1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR10X1 (select a term)
intoGenOR10X1
Cancer3DOR10X1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenOR10X1
Genetic Testing Registry OR10X1
NextProtQ8NGY0 [Medical]
TSGene128367
GENETestsOR10X1
Target ValidationOR10X1
Huge Navigator OR10X1 [HugePedia]
snp3D : Map Gene to Disease128367
BioCentury BCIQOR10X1
ClinGenOR10X1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD128367
Chemical/Pharm GKB GenePA32007
Clinical trialOR10X1
Miscellaneous
canSAR (ICR)OR10X1 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR10X1
EVEXOR10X1
GoPubMedOR10X1
iHOPOR10X1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:33:47 CEST 2017

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