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OR12D1 (olfactory receptor family 12 subfamily D member 1 (gene/pseudogene))

Identity

Alias_namesOR12D1P
olfactory receptor, family 12, subfamily D, member 1
olfactory receptor, family 12, subfamily D, member 1 pseudogene
olfactory receptor, family 12, subfamily D, member 1 (gene/pseudogene)
Alias_symbol (synonym)hs6M1-19
Other alias
HGNC (Hugo) OR12D1
LocusID (NCBI) 26530
Atlas_Id 80239
Location 6p22.1  [Link to chromosome band 6p22]
Location_base_pair Starts at 29417065 and ends at 29418396 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OR12D1   8177
Cards
Entrez_Gene (NCBI)OR12D1  26530  olfactory receptor family 12 subfamily D member 1 (gene/pseudogene)
AliasesOR12D1P; hs6M1-19
GeneCards (Weizmann)OR12D1
Ensembl hg19 (Hinxton)ENSG00000251608 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000251608 [Gene_View]  ENSG00000251608 [Sequence]  chr6:29417065-29418396 [Contig_View]  OR12D1 [Vega]
ICGC DataPortalENSG00000251608
TCGA cBioPortalOR12D1
AceView (NCBI)OR12D1
Genatlas (Paris)OR12D1
WikiGenes26530
SOURCE (Princeton)OR12D1
Genetics Home Reference (NIH)OR12D1
Genomic and cartography
GoldenPath hg38 (UCSC)OR12D1  -     chr6:29417065-29418396 +  6p22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OR12D1  -     6p22.1   [Description]    (hg19-Feb_2009)
EnsemblOR12D1 - 6p22.1 [CytoView hg19]  OR12D1 - 6p22.1 [CytoView hg38]
Mapping of homologs : NCBIOR12D1 [Mapview hg19]  OR12D1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001348208
RefSeq genomic (Entrez)NC_000006 NC_018917 NT_113891 NT_167245 NT_167246 NT_167247 NT_167248 NT_167249
Consensus coding sequences : CCDS (NCBI)OR12D1
Alternative Splicing GalleryENSG00000251608
Gene ExpressionOR12D1 [ NCBI-GEO ]   OR12D1 [ EBI - ARRAY_EXPRESS ]   OR12D1 [ SEEK ]   OR12D1 [ MEM ]
Gene Expression Viewer (FireBrowse)OR12D1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)26530
GTEX Portal (Tissue expression)OR12D1
Human Protein AtlasENSG00000251608-OR12D1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP0DN82   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP0DN82  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP0DN82
Splice isoforms : SwissVarP0DN82
PhosPhoSitePlusP0DN82
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OR12D1
DMDM Disease mutations26530
Blocks (Seattle)OR12D1
SuperfamilyP0DN82
Human Protein Atlas [tissue]ENSG00000251608-OR12D1 [tissue]
Peptide AtlasP0DN82
Protein Interaction databases
DIP (DOE-UCLA)P0DN82
IntAct (EBI)P0DN82
FunCoupENSG00000251608
BioGRIDOR12D1
STRING (EMBL)OR12D1
ZODIACOR12D1
Ontologies - Pathways
QuickGOP0DN82
Ontology : AmiGOG-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBIG-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
NDEx NetworkOR12D1
Atlas of Cancer Signalling NetworkOR12D1
Wikipedia pathwaysOR12D1
Orthology - Evolution
OrthoDB26530
GeneTree (enSembl)ENSG00000251608
Phylogenetic Trees/Animal Genes : TreeFamOR12D1
HOVERGENP0DN82
HOGENOMP0DN82
Homologs : HomoloGeneOR12D1
Homology/Alignments : Family Browser (UCSC)OR12D1
Gene fusions - Rearrangements
Fusion : QuiverOR12D1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR12D1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR12D1
dbVarOR12D1
ClinVarOR12D1
1000_GenomesOR12D1 
Exome Variant ServerOR12D1
ExAC (Exome Aggregation Consortium)ENSG00000251608
GNOMAD BrowserENSG00000251608
Varsome BrowserOR12D1
Genetic variants : HAPMAP26530
Genomic Variants (DGV)OR12D1 [DGVbeta]
DECIPHEROR12D1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOR12D1 
Mutations
ICGC Data PortalOR12D1 
TCGA Data PortalOR12D1 
Broad Tumor PortalOR12D1
OASIS PortalOR12D1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDOR12D1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR12D1
DgiDB (Drug Gene Interaction Database)OR12D1
DoCM (Curated mutations)OR12D1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR12D1 (select a term)
intoGenOR12D1
Cancer3DOR12D1(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETOR12D1
MedgenOR12D1
Genetic Testing Registry OR12D1
NextProtP0DN82 [Medical]
TSGene26530
GENETestsOR12D1
Target ValidationOR12D1
Huge Navigator OR12D1 [HugePedia]
snp3D : Map Gene to Disease26530
BioCentury BCIQOR12D1
ClinGenOR12D1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD26530
Chemical/Pharm GKB GenePA32027
Clinical trialOR12D1
Miscellaneous
canSAR (ICR)OR12D1 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR12D1
EVEXOR12D1
GoPubMedOR12D1
iHOPOR12D1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 14:21:13 CEST 2018

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