Atlas of Genetics and Cytogenetics in Oncology and Haematology

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   
X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

OR12D2 (olfactory receptor family 12 subfamily D member 2 (gene/pseudogene))

Identity

Alias (NCBI)DJ994E9.8
HS6M1-20
HGNC (Hugo) OR12D2
HGNC Alias symbhs6M1-20
HGNC Previous nameolfactory receptor, family 12, subfamily D, member 2
 olfactory receptor, family 12, subfamily D, member 2 (gene/pseudogene)
LocusID (NCBI) 26529
Atlas_Id 71185
Location 6p22.1  [Link to chromosome band 6p22]
Location_base_pair Starts at 29396639 and ends at 29397671 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)OR12D2   8178
Cards
Entrez_Gene (NCBI)OR12D2    olfactory receptor family 12 subfamily D member 2 (gene/pseudogene)
AliasesDJ994E9.8; HS6M1-20
GeneCards (Weizmann)OR12D2
Ensembl hg19 (Hinxton)ENSG00000280236 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000280236 [Gene_View]  ENSG00000280236 [Sequence]  chr6:29396639-29397671 [Contig_View]  OR12D2 [Vega]
ICGC DataPortalENSG00000280236
TCGA cBioPortalOR12D2
AceView (NCBI)OR12D2
Genatlas (Paris)OR12D2
SOURCE (Princeton)OR12D2
Genetics Home Reference (NIH)OR12D2
Genomic and cartography
GoldenPath hg38 (UCSC)OR12D2  -     chr6:29396639-29397671 +  6p22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OR12D2  -     6p22.1   [Description]    (hg19-Feb_2009)
GoldenPathOR12D2 - 6p22.1 [CytoView hg19]  OR12D2 - 6p22.1 [CytoView hg38]
ImmunoBaseENSG00000280236
genome Data Viewer NCBIOR12D2 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AJ459861 BC069123 BC101742 BC101746
RefSeq transcript (Entrez)NM_013936
RefSeq genomic (Entrez)NC_000006 NG_053020 NT_113891 NT_167245 NT_167246 NT_167247 NT_167249
Consensus coding sequences : CCDS (NCBI)OR12D2
Alternative Splicing GalleryENSG00000280236
Gene ExpressionOR12D2 [ NCBI-GEO ]   OR12D2 [ EBI - ARRAY_EXPRESS ]   OR12D2 [ SEEK ]   OR12D2 [ MEM ]
Gene Expression Viewer (FireBrowse)OR12D2 [ Firebrowse - Broad ]
GenevisibleExpression of OR12D2 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)26529
GTEX Portal (Tissue expression)OR12D2
Human Protein AtlasENSG00000280236-OR12D2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP58182   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP58182  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP58182
Splice isoforms : SwissVarP58182
PhosPhoSitePlusP58182
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)7tm_4 (PF13853)   
Domain families : Pfam (NCBI)pfam13853   
Conserved Domain (NCBI)OR12D2
Blocks (Seattle)OR12D2
SuperfamilyP58182
Human Protein Atlas [tissue]ENSG00000280236-OR12D2 [tissue]
Peptide AtlasP58182
HPRD17678
IPIIPI00011054   IPI00892894   IPI00893260   
Protein Interaction databases
DIP (DOE-UCLA)P58182
IntAct (EBI)P58182
BioGRIDOR12D2
STRING (EMBL)OR12D2
ZODIACOR12D2
Ontologies - Pathways
QuickGOP58182
Ontology : AmiGOG protein-coupled receptor activity  olfactory receptor activity  plasma membrane  G protein-coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBIG protein-coupled receptor activity  olfactory receptor activity  plasma membrane  G protein-coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
NDEx NetworkOR12D2
Atlas of Cancer Signalling NetworkOR12D2
Wikipedia pathwaysOR12D2
Orthology - Evolution
OrthoDB26529
GeneTree (enSembl)ENSG00000280236
Phylogenetic Trees/Animal Genes : TreeFamOR12D2
HOGENOMP58182
Homologs : HomoloGeneOR12D2
Homology/Alignments : Family Browser (UCSC)OR12D2
Gene fusions - Rearrangements
Fusion : QuiverOR12D2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR12D2 [hg38]
dbVarOR12D2
ClinVarOR12D2
MonarchOR12D2
1000_GenomesOR12D2 
Exome Variant ServerOR12D2
GNOMAD BrowserENSG00000280236
Varsome BrowserOR12D2
Genomic Variants (DGV)OR12D2 [DGVbeta]
DECIPHEROR12D2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOR12D2 
Mutations
ICGC Data PortalOR12D2 
TCGA Data PortalOR12D2 
Broad Tumor PortalOR12D2
OASIS PortalOR12D2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR12D2  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DOR12D2
Mutations and Diseases : HGMDOR12D2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR12D2
DgiDB (Drug Gene Interaction Database)OR12D2
DoCM (Curated mutations)OR12D2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR12D2 (select a term)
intoGenOR12D2
Cancer3DOR12D2(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETOR12D2
MedgenOR12D2
Genetic Testing Registry OR12D2
NextProtP58182 [Medical]
GENETestsOR12D2
Target ValidationOR12D2
Huge Navigator OR12D2 [HugePedia]
ClinGenOR12D2
Clinical trials, drugs, therapy
MyCancerGenomeOR12D2
Protein Interactions : CTD
Pharm GKB GenePA32028
Clinical trialOR12D2
Miscellaneous
canSAR (ICR)OR12D2 (select the gene name)
HarmonizomeOR12D2
DataMed IndexOR12D2
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR12D2
EVEXOR12D2
GoPubMedOR12D2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Dec 5 17:20:10 CET 2020
Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.