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OR12D3 (olfactory receptor family 12 subfamily D member 3)

Identity

Alias_namesolfactory receptor, family 12, subfamily D, member 3
Alias_symbol (synonym)hs6M1-27
Other alias
HGNC (Hugo) OR12D3
LocusID (NCBI) 81797
Atlas_Id 71186
Location 6p22.1  [Link to chromosome band 6p22]
Location_base_pair Starts at 29373423 and ends at 29375291 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OR12D3   13963
Cards
Entrez_Gene (NCBI)OR12D3  81797  olfactory receptor family 12 subfamily D member 3
Aliaseshs6M1-27
GeneCards (Weizmann)OR12D3
Ensembl hg19 (Hinxton)ENSG00000112462 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000112462 [Gene_View]  ENSG00000112462 [Sequence]  chr6:29373423-29375291 [Contig_View]  OR12D3 [Vega]
ICGC DataPortalENSG00000112462
TCGA cBioPortalOR12D3
AceView (NCBI)OR12D3
Genatlas (Paris)OR12D3
WikiGenes81797
SOURCE (Princeton)OR12D3
Genetics Home Reference (NIH)OR12D3
Genomic and cartography
GoldenPath hg38 (UCSC)OR12D3  -     chr6:29373423-29375291 -  6p22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OR12D3  -     6p22.1   [Description]    (hg19-Feb_2009)
EnsemblOR12D3 - 6p22.1 [CytoView hg19]  OR12D3 - 6p22.1 [CytoView hg38]
Mapping of homologs : NCBIOR12D3 [Mapview hg19]  OR12D3 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AJ459858 BC069082 BC069154 BC103892 BC106898
RefSeq transcript (Entrez)NM_030959
RefSeq genomic (Entrez)NC_000006 NC_018917 NT_113891 NT_167245 NT_167246 NT_167247 NT_167249
Consensus coding sequences : CCDS (NCBI)OR12D3
Cluster EST : UnigeneHs.272280 [ NCBI ]
CGAP (NCI)Hs.272280
Alternative Splicing GalleryENSG00000112462
Gene ExpressionOR12D3 [ NCBI-GEO ]   OR12D3 [ EBI - ARRAY_EXPRESS ]   OR12D3 [ SEEK ]   OR12D3 [ MEM ]
Gene Expression Viewer (FireBrowse)OR12D3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)81797
GTEX Portal (Tissue expression)OR12D3
Human Protein AtlasENSG00000112462-OR12D3 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UGF7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UGF7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UGF7
Splice isoforms : SwissVarQ9UGF7
PhosPhoSitePlusQ9UGF7
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OR12D3
DMDM Disease mutations81797
Blocks (Seattle)OR12D3
SuperfamilyQ9UGF7
Human Protein Atlas [tissue]ENSG00000112462-OR12D3 [tissue]
Peptide AtlasQ9UGF7
HPRD17679
IPIIPI00005290   IPI00644263   
Protein Interaction databases
DIP (DOE-UCLA)Q9UGF7
IntAct (EBI)Q9UGF7
FunCoupENSG00000112462
BioGRIDOR12D3
STRING (EMBL)OR12D3
ZODIACOR12D3
Ontologies - Pathways
QuickGOQ9UGF7
Ontology : AmiGO###############################################################################################################################################################################################################################################################                
Ontology : EGO-EBI###############################################################################################################################################################################################################################################################                
NDEx NetworkOR12D3
Atlas of Cancer Signalling NetworkOR12D3
Wikipedia pathwaysOR12D3
Orthology - Evolution
OrthoDB81797
GeneTree (enSembl)ENSG00000112462
Phylogenetic Trees/Animal Genes : TreeFamOR12D3
HOVERGENQ9UGF7
HOGENOMQ9UGF7
Homologs : HomoloGeneOR12D3
Homology/Alignments : Family Browser (UCSC)OR12D3
Gene fusions - Rearrangements
Fusion : QuiverOR12D3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR12D3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR12D3
dbVarOR12D3
ClinVarOR12D3
1000_GenomesOR12D3 
Exome Variant ServerOR12D3
ExAC (Exome Aggregation Consortium)ENSG00000112462
GNOMAD BrowserENSG00000112462
Varsome BrowserOR12D3
Genetic variants : HAPMAP81797
Genomic Variants (DGV)OR12D3 [DGVbeta]
DECIPHEROR12D3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOR12D3 
Mutations
ICGC Data PortalOR12D3 
TCGA Data PortalOR12D3 
Broad Tumor PortalOR12D3
OASIS PortalOR12D3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR12D3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOR12D3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR12D3
DgiDB (Drug Gene Interaction Database)OR12D3
DoCM (Curated mutations)OR12D3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR12D3 (select a term)
intoGenOR12D3
Cancer3DOR12D3(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETOR12D3
MedgenOR12D3
Genetic Testing Registry OR12D3
NextProtQ9UGF7 [Medical]
TSGene81797
GENETestsOR12D3
Target ValidationOR12D3
Huge Navigator OR12D3 [HugePedia]
snp3D : Map Gene to Disease81797
BioCentury BCIQOR12D3
ClinGenOR12D3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD81797
Chemical/Pharm GKB GenePA32029
Clinical trialOR12D3
Miscellaneous
canSAR (ICR)OR12D3 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR12D3
EVEXOR12D3
GoPubMedOR12D3
iHOPOR12D3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 14:21:14 CEST 2018

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