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OR13A1 (olfactory receptor family 13 subfamily A member 1)

Identity

Alias_namesolfactory receptor, family 13, subfamily A, member 1
Other alias-
HGNC (Hugo) OR13A1
LocusID (NCBI) 79290
Atlas_Id 71187
Location 10q11.21  [Link to chromosome band 10q11]
Location_base_pair Starts at 45302654 and ends at 45315608 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
FRMD4A (10p13) / OR13A1 (10q11.21)NCOA4 (10q11.23) / OR13A1 (10q11.21)NCOA4 OR13A1
FRMD4A OR13A1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OR13A1   14772
Cards
Entrez_Gene (NCBI)OR13A1  79290  olfactory receptor family 13 subfamily A member 1
Aliases
GeneCards (Weizmann)OR13A1
Ensembl hg19 (Hinxton)ENSG00000256574 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000256574 [Gene_View]  chr10:45302654-45315608 [Contig_View]  OR13A1 [Vega]
ICGC DataPortalENSG00000256574
TCGA cBioPortalOR13A1
AceView (NCBI)OR13A1
Genatlas (Paris)OR13A1
WikiGenes79290
SOURCE (Princeton)OR13A1
Genetics Home Reference (NIH)OR13A1
Genomic and cartography
GoldenPath hg38 (UCSC)OR13A1  -     chr10:45302654-45315608 -  10q11.21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OR13A1  -     10q11.21   [Description]    (hg19-Feb_2009)
EnsemblOR13A1 - 10q11.21 [CytoView hg19]  OR13A1 - 10q11.21 [CytoView hg38]
Mapping of homologs : NCBIOR13A1 [Mapview hg19]  OR13A1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK131555 BC104853 BC104855 BC143622
RefSeq transcript (Entrez)NM_001004297
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OR13A1
Cluster EST : UnigeneHs.532435 [ NCBI ]
CGAP (NCI)Hs.532435
Alternative Splicing GalleryENSG00000256574
Gene ExpressionOR13A1 [ NCBI-GEO ]   OR13A1 [ EBI - ARRAY_EXPRESS ]   OR13A1 [ SEEK ]   OR13A1 [ MEM ]
Gene Expression Viewer (FireBrowse)OR13A1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79290
GTEX Portal (Tissue expression)OR13A1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NGR1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NGR1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NGR1
Splice isoforms : SwissVarQ8NGR1
PhosPhoSitePlusQ8NGR1
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OR13A1
DMDM Disease mutations79290
Blocks (Seattle)OR13A1
SuperfamilyQ8NGR1
Human Protein AtlasENSG00000256574
Peptide AtlasQ8NGR1
HPRD14904
IPIIPI00465098   
Protein Interaction databases
DIP (DOE-UCLA)Q8NGR1
IntAct (EBI)Q8NGR1
FunCoupENSG00000256574
BioGRIDOR13A1
STRING (EMBL)OR13A1
ZODIACOR13A1
Ontologies - Pathways
QuickGOQ8NGR1
Ontology : AmiGOG-protein coupled receptor activity  olfactory receptor activity  odorant binding  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBIG-protein coupled receptor activity  olfactory receptor activity  odorant binding  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Pathways : KEGGOlfactory transduction   
NDEx NetworkOR13A1
Atlas of Cancer Signalling NetworkOR13A1
Wikipedia pathwaysOR13A1
Orthology - Evolution
OrthoDB79290
GeneTree (enSembl)ENSG00000256574
Phylogenetic Trees/Animal Genes : TreeFamOR13A1
HOVERGENQ8NGR1
HOGENOMQ8NGR1
Homologs : HomoloGeneOR13A1
Homology/Alignments : Family Browser (UCSC)OR13A1
Gene fusions - Rearrangements
Fusion: TCGANCOA4 OR13A1
Fusion: TCGAFRMD4A OR13A1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR13A1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR13A1
dbVarOR13A1
ClinVarOR13A1
1000_GenomesOR13A1 
Exome Variant ServerOR13A1
ExAC (Exome Aggregation Consortium)OR13A1 (select the gene name)
Genetic variants : HAPMAP79290
Genomic Variants (DGV)OR13A1 [DGVbeta]
DECIPHEROR13A1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOR13A1 
Mutations
ICGC Data PortalOR13A1 
TCGA Data PortalOR13A1 
Broad Tumor PortalOR13A1
OASIS PortalOR13A1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR13A1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOR13A1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR13A1
DgiDB (Drug Gene Interaction Database)OR13A1
DoCM (Curated mutations)OR13A1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR13A1 (select a term)
intoGenOR13A1
Cancer3DOR13A1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenOR13A1
Genetic Testing Registry OR13A1
NextProtQ8NGR1 [Medical]
TSGene79290
GENETestsOR13A1
Target ValidationOR13A1
Huge Navigator OR13A1 [HugePedia]
snp3D : Map Gene to Disease79290
BioCentury BCIQOR13A1
ClinGenOR13A1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79290
Chemical/Pharm GKB GenePA32030
Clinical trialOR13A1
Miscellaneous
canSAR (ICR)OR13A1 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR13A1
EVEXOR13A1
GoPubMedOR13A1
iHOPOR13A1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:32:48 CEST 2017

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