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OR13C2 (olfactory receptor family 13 subfamily C member 2)

Identity

Alias_namesolfactory receptor, family 13, subfamily C, member 2
Other aliasOR37K
HGNC (Hugo) OR13C2
LocusID (NCBI) 392376
Atlas_Id 71188
Location 9q31.1  [Link to chromosome band 9q31]
Location_base_pair Starts at 104604671 and ends at 104605627 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OR13C2   14701
Cards
Entrez_Gene (NCBI)OR13C2  392376  olfactory receptor family 13 subfamily C member 2
AliasesOR37K
GeneCards (Weizmann)OR13C2
Ensembl hg19 (Hinxton)ENSG00000276119 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000276119 [Gene_View]  chr9:104604671-104605627 [Contig_View]  OR13C2 [Vega]
ICGC DataPortalENSG00000276119
TCGA cBioPortalOR13C2
AceView (NCBI)OR13C2
Genatlas (Paris)OR13C2
WikiGenes392376
SOURCE (Princeton)OR13C2
Genetics Home Reference (NIH)OR13C2
Genomic and cartography
GoldenPath hg38 (UCSC)OR13C2  -     chr9:104604671-104605627 -  9q31.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OR13C2  -     9q31.1   [Description]    (hg19-Feb_2009)
EnsemblOR13C2 - 9q31.1 [CytoView hg19]  OR13C2 - 9q31.1 [CytoView hg38]
Mapping of homologs : NCBIOR13C2 [Mapview hg19]  OR13C2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC136824 BC136826
RefSeq transcript (Entrez)NM_001004481
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OR13C2
Cluster EST : UnigeneHs.553789 [ NCBI ]
CGAP (NCI)Hs.553789
Alternative Splicing GalleryENSG00000276119
Gene ExpressionOR13C2 [ NCBI-GEO ]   OR13C2 [ EBI - ARRAY_EXPRESS ]   OR13C2 [ SEEK ]   OR13C2 [ MEM ]
Gene Expression Viewer (FireBrowse)OR13C2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)392376
GTEX Portal (Tissue expression)OR13C2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NGS9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NGS9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NGS9
Splice isoforms : SwissVarQ8NGS9
PhosPhoSitePlusQ8NGS9
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OR13C2
DMDM Disease mutations392376
Blocks (Seattle)OR13C2
SuperfamilyQ8NGS9
Human Protein AtlasENSG00000276119
Peptide AtlasQ8NGS9
HPRD14905
IPIIPI00376778   
Protein Interaction databases
DIP (DOE-UCLA)Q8NGS9
IntAct (EBI)Q8NGS9
FunCoupENSG00000276119
BioGRIDOR13C2
STRING (EMBL)OR13C2
ZODIACOR13C2
Ontologies - Pathways
QuickGOQ8NGS9
Ontology : AmiGOG-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  sensory perception of smell  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBIG-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  sensory perception of smell  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Pathways : KEGGOlfactory transduction   
NDEx NetworkOR13C2
Atlas of Cancer Signalling NetworkOR13C2
Wikipedia pathwaysOR13C2
Orthology - Evolution
OrthoDB392376
GeneTree (enSembl)ENSG00000276119
Phylogenetic Trees/Animal Genes : TreeFamOR13C2
HOVERGENQ8NGS9
HOGENOMQ8NGS9
Homologs : HomoloGeneOR13C2
Homology/Alignments : Family Browser (UCSC)OR13C2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR13C2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR13C2
dbVarOR13C2
ClinVarOR13C2
1000_GenomesOR13C2 
Exome Variant ServerOR13C2
ExAC (Exome Aggregation Consortium)OR13C2 (select the gene name)
Genetic variants : HAPMAP392376
Genomic Variants (DGV)OR13C2 [DGVbeta]
DECIPHEROR13C2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOR13C2 
Mutations
ICGC Data PortalOR13C2 
TCGA Data PortalOR13C2 
Broad Tumor PortalOR13C2
OASIS PortalOR13C2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR13C2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOR13C2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR13C2
DgiDB (Drug Gene Interaction Database)OR13C2
DoCM (Curated mutations)OR13C2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR13C2 (select a term)
intoGenOR13C2
Cancer3DOR13C2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenOR13C2
Genetic Testing Registry OR13C2
NextProtQ8NGS9 [Medical]
TSGene392376
GENETestsOR13C2
Target ValidationOR13C2
Huge Navigator OR13C2 [HugePedia]
snp3D : Map Gene to Disease392376
BioCentury BCIQOR13C2
ClinGenOR13C2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD392376
Chemical/Pharm GKB GenePA32032
Clinical trialOR13C2
Miscellaneous
canSAR (ICR)OR13C2 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR13C2
EVEXOR13C2
GoPubMedOR13C2
iHOPOR13C2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:33:50 CEST 2017

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