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OR13C3 (olfactory receptor family 13 subfamily C member 3)

Identity

Alias_namesolfactory receptor, family 13, subfamily C, member 3
Other aliasOR37G
OR9-8
HGNC (Hugo) OR13C3
LocusID (NCBI) 138803
Atlas_Id 71189
Location 9q31.1  [Link to chromosome band 9q31]
Location_base_pair Starts at 104535770 and ends at 104536813 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OR13C3   14704
Cards
Entrez_Gene (NCBI)OR13C3  138803  olfactory receptor family 13 subfamily C member 3
AliasesOR37G; OR9-8
GeneCards (Weizmann)OR13C3
Ensembl hg19 (Hinxton)ENSG00000204246 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000204246 [Gene_View]  chr9:104535770-104536813 [Contig_View]  OR13C3 [Vega]
ICGC DataPortalENSG00000204246
TCGA cBioPortalOR13C3
AceView (NCBI)OR13C3
Genatlas (Paris)OR13C3
WikiGenes138803
SOURCE (Princeton)OR13C3
Genetics Home Reference (NIH)OR13C3
Genomic and cartography
GoldenPath hg38 (UCSC)OR13C3  -     chr9:104535770-104536813 -  9q31.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OR13C3  -     9q31.1   [Description]    (hg19-Feb_2009)
EnsemblOR13C3 - 9q31.1 [CytoView hg19]  OR13C3 - 9q31.1 [CytoView hg38]
Mapping of homologs : NCBIOR13C3 [Mapview hg19]  OR13C3 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC136949 BC136952
RefSeq transcript (Entrez)NM_001001961
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OR13C3
Cluster EST : UnigeneHs.553600 [ NCBI ]
CGAP (NCI)Hs.553600
Alternative Splicing GalleryENSG00000204246
Gene ExpressionOR13C3 [ NCBI-GEO ]   OR13C3 [ EBI - ARRAY_EXPRESS ]   OR13C3 [ SEEK ]   OR13C3 [ MEM ]
Gene Expression Viewer (FireBrowse)OR13C3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)138803
GTEX Portal (Tissue expression)OR13C3
Human Protein AtlasENSG00000204246-OR13C3 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NGS6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NGS6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NGS6
Splice isoforms : SwissVarQ8NGS6
PhosPhoSitePlusQ8NGS6
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OR13C3
DMDM Disease mutations138803
Blocks (Seattle)OR13C3
SuperfamilyQ8NGS6
Human Protein Atlas [tissue]ENSG00000204246-OR13C3 [tissue]
Peptide AtlasQ8NGS6
HPRD14906
IPIIPI00169115   
Protein Interaction databases
DIP (DOE-UCLA)Q8NGS6
IntAct (EBI)Q8NGS6
FunCoupENSG00000204246
BioGRIDOR13C3
STRING (EMBL)OR13C3
ZODIACOR13C3
Ontologies - Pathways
QuickGOQ8NGS6
Ontology : AmiGOG-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  sensory perception of smell  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBIG-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  sensory perception of smell  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Pathways : KEGGOlfactory transduction   
NDEx NetworkOR13C3
Atlas of Cancer Signalling NetworkOR13C3
Wikipedia pathwaysOR13C3
Orthology - Evolution
OrthoDB138803
GeneTree (enSembl)ENSG00000204246
Phylogenetic Trees/Animal Genes : TreeFamOR13C3
HOVERGENQ8NGS6
HOGENOMQ8NGS6
Homologs : HomoloGeneOR13C3
Homology/Alignments : Family Browser (UCSC)OR13C3
Gene fusions - Rearrangements
Tumor Fusion PortalOR13C3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR13C3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR13C3
dbVarOR13C3
ClinVarOR13C3
1000_GenomesOR13C3 
Exome Variant ServerOR13C3
ExAC (Exome Aggregation Consortium)ENSG00000204246
GNOMAD BrowserENSG00000204246
Genetic variants : HAPMAP138803
Genomic Variants (DGV)OR13C3 [DGVbeta]
DECIPHEROR13C3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOR13C3 
Mutations
ICGC Data PortalOR13C3 
TCGA Data PortalOR13C3 
Broad Tumor PortalOR13C3
OASIS PortalOR13C3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR13C3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOR13C3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR13C3
DgiDB (Drug Gene Interaction Database)OR13C3
DoCM (Curated mutations)OR13C3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR13C3 (select a term)
intoGenOR13C3
Cancer3DOR13C3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETOR13C3
MedgenOR13C3
Genetic Testing Registry OR13C3
NextProtQ8NGS6 [Medical]
TSGene138803
GENETestsOR13C3
Target ValidationOR13C3
Huge Navigator OR13C3 [HugePedia]
snp3D : Map Gene to Disease138803
BioCentury BCIQOR13C3
ClinGenOR13C3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD138803
Chemical/Pharm GKB GenePA32033
Clinical trialOR13C3
Miscellaneous
canSAR (ICR)OR13C3 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR13C3
EVEXOR13C3
GoPubMedOR13C3
iHOPOR13C3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:20:24 CET 2017

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