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OR13C4 (olfactory receptor family 13 subfamily C member 4)

Identity

Alias_namesolfactory receptor, family 13, subfamily C, member 4
Other aliasHSHTPCRX17
HTPCRX17
OR2K1
OR37F
OR9-7
HGNC (Hugo) OR13C4
LocusID (NCBI) 138804
Atlas_Id 71190
Location 9q31.1  [Link to chromosome band 9q31]
Location_base_pair Starts at 104526253 and ends at 104527209 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OR13C4   14722
Cards
Entrez_Gene (NCBI)OR13C4  138804  olfactory receptor family 13 subfamily C member 4
AliasesHSHTPCRX17; HTPCRX17; OR2K1; OR37F; 
OR9-7
GeneCards (Weizmann)OR13C4
Ensembl hg19 (Hinxton)ENSG00000148136 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000148136 [Gene_View]  chr9:104526253-104527209 [Contig_View]  OR13C4 [Vega]
ICGC DataPortalENSG00000148136
TCGA cBioPortalOR13C4
AceView (NCBI)OR13C4
Genatlas (Paris)OR13C4
WikiGenes138804
SOURCE (Princeton)OR13C4
Genetics Home Reference (NIH)OR13C4
Genomic and cartography
GoldenPath hg38 (UCSC)OR13C4  -     chr9:104526253-104527209 -  9q31.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OR13C4  -     9q31.1   [Description]    (hg19-Feb_2009)
EnsemblOR13C4 - 9q31.1 [CytoView hg19]  OR13C4 - 9q31.1 [CytoView hg38]
Mapping of homologs : NCBIOR13C4 [Mapview hg19]  OR13C4 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC148382 BC153007 X64991
RefSeq transcript (Entrez)NM_001001919
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OR13C4
Cluster EST : UnigeneHs.553601 [ NCBI ]
CGAP (NCI)Hs.553601
Alternative Splicing GalleryENSG00000148136
Gene ExpressionOR13C4 [ NCBI-GEO ]   OR13C4 [ EBI - ARRAY_EXPRESS ]   OR13C4 [ SEEK ]   OR13C4 [ MEM ]
Gene Expression Viewer (FireBrowse)OR13C4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)138804
GTEX Portal (Tissue expression)OR13C4
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NGS5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NGS5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NGS5
Splice isoforms : SwissVarQ8NGS5
PhosPhoSitePlusQ8NGS5
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OR13C4
DMDM Disease mutations138804
Blocks (Seattle)OR13C4
SuperfamilyQ8NGS5
Human Protein AtlasENSG00000148136
Peptide AtlasQ8NGS5
HPRD11411
IPIIPI00169113   IPI01012265   
Protein Interaction databases
DIP (DOE-UCLA)Q8NGS5
IntAct (EBI)Q8NGS5
FunCoupENSG00000148136
BioGRIDOR13C4
STRING (EMBL)OR13C4
ZODIACOR13C4
Ontologies - Pathways
QuickGOQ8NGS5
Ontology : AmiGOG-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  sensory perception of smell  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  positive regulation of protein targeting to mitochondrion  
Ontology : EGO-EBIG-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  sensory perception of smell  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  positive regulation of protein targeting to mitochondrion  
Pathways : KEGGOlfactory transduction   
NDEx NetworkOR13C4
Atlas of Cancer Signalling NetworkOR13C4
Wikipedia pathwaysOR13C4
Orthology - Evolution
OrthoDB138804
GeneTree (enSembl)ENSG00000148136
Phylogenetic Trees/Animal Genes : TreeFamOR13C4
HOVERGENQ8NGS5
HOGENOMQ8NGS5
Homologs : HomoloGeneOR13C4
Homology/Alignments : Family Browser (UCSC)OR13C4
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR13C4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR13C4
dbVarOR13C4
ClinVarOR13C4
1000_GenomesOR13C4 
Exome Variant ServerOR13C4
ExAC (Exome Aggregation Consortium)OR13C4 (select the gene name)
Genetic variants : HAPMAP138804
Genomic Variants (DGV)OR13C4 [DGVbeta]
DECIPHEROR13C4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOR13C4 
Mutations
ICGC Data PortalOR13C4 
TCGA Data PortalOR13C4 
Broad Tumor PortalOR13C4
OASIS PortalOR13C4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR13C4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOR13C4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR13C4
DgiDB (Drug Gene Interaction Database)OR13C4
DoCM (Curated mutations)OR13C4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR13C4 (select a term)
intoGenOR13C4
Cancer3DOR13C4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenOR13C4
Genetic Testing Registry OR13C4
NextProtQ8NGS5 [Medical]
TSGene138804
GENETestsOR13C4
Target ValidationOR13C4
Huge Navigator OR13C4 [HugePedia]
snp3D : Map Gene to Disease138804
BioCentury BCIQOR13C4
ClinGenOR13C4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD138804
Chemical/Pharm GKB GenePA32034
Clinical trialOR13C4
Miscellaneous
canSAR (ICR)OR13C4 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR13C4
EVEXOR13C4
GoPubMedOR13C4
iHOPOR13C4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:32:49 CEST 2017

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