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OR13C5 (olfactory receptor family 13 subfamily C member 5)

Identity

Alias_namesolfactory receptor
Other aliasOR9-11
HGNC (Hugo) OR13C5
LocusID (NCBI) 138799
Atlas_Id 53029
Location 9q31.1  [Link to chromosome band 9q31]
Location_base_pair Starts at 104598457 and ends at 104599413 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
C8orf82 (8q24.3) / OR13C5 (9q31.1)JUP (17q21.2) / OR13C5 (9q31.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OR13C5   15100
Cards
Entrez_Gene (NCBI)OR13C5  138799  olfactory receptor family 13 subfamily C member 5
AliasesOR9-11
GeneCards (Weizmann)OR13C5
Ensembl hg19 (Hinxton)ENSG00000277556 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000277556 [Gene_View]  chr9:104598457-104599413 [Contig_View]  OR13C5 [Vega]
ICGC DataPortalENSG00000277556
TCGA cBioPortalOR13C5
AceView (NCBI)OR13C5
Genatlas (Paris)OR13C5
WikiGenes138799
SOURCE (Princeton)OR13C5
Genetics Home Reference (NIH)OR13C5
Genomic and cartography
GoldenPath hg38 (UCSC)OR13C5  -     chr9:104598457-104599413 -  9q31.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OR13C5  -     9q31.1   [Description]    (hg19-Feb_2009)
EnsemblOR13C5 - 9q31.1 [CytoView hg19]  OR13C5 - 9q31.1 [CytoView hg38]
Mapping of homologs : NCBIOR13C5 [Mapview hg19]  OR13C5 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC136842 BC136843
RefSeq transcript (Entrez)NM_001004482
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OR13C5
Cluster EST : UnigeneHs.553598 [ NCBI ]
CGAP (NCI)Hs.553598
Alternative Splicing GalleryENSG00000277556
Gene ExpressionOR13C5 [ NCBI-GEO ]   OR13C5 [ EBI - ARRAY_EXPRESS ]   OR13C5 [ SEEK ]   OR13C5 [ MEM ]
Gene Expression Viewer (FireBrowse)OR13C5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)138799
GTEX Portal (Tissue expression)OR13C5
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NGS8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NGS8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NGS8
Splice isoforms : SwissVarQ8NGS8
PhosPhoSitePlusQ8NGS8
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OR13C5
DMDM Disease mutations138799
Blocks (Seattle)OR13C5
SuperfamilyQ8NGS8
Human Protein AtlasENSG00000277556
Peptide AtlasQ8NGS8
HPRD14907
IPIIPI00062312   
Protein Interaction databases
DIP (DOE-UCLA)Q8NGS8
IntAct (EBI)Q8NGS8
FunCoupENSG00000277556
BioGRIDOR13C5
STRING (EMBL)OR13C5
ZODIACOR13C5
Ontologies - Pathways
QuickGOQ8NGS8
Ontology : AmiGOG-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  sensory perception of smell  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBIG-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  sensory perception of smell  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Pathways : KEGGOlfactory transduction   
NDEx NetworkOR13C5
Atlas of Cancer Signalling NetworkOR13C5
Wikipedia pathwaysOR13C5
Orthology - Evolution
OrthoDB138799
GeneTree (enSembl)ENSG00000277556
Phylogenetic Trees/Animal Genes : TreeFamOR13C5
HOVERGENQ8NGS8
HOGENOMQ8NGS8
Homologs : HomoloGeneOR13C5
Homology/Alignments : Family Browser (UCSC)OR13C5
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR13C5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR13C5
dbVarOR13C5
ClinVarOR13C5
1000_GenomesOR13C5 
Exome Variant ServerOR13C5
ExAC (Exome Aggregation Consortium)OR13C5 (select the gene name)
Genetic variants : HAPMAP138799
Genomic Variants (DGV)OR13C5 [DGVbeta]
DECIPHEROR13C5 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOR13C5 
Mutations
ICGC Data PortalOR13C5 
TCGA Data PortalOR13C5 
Broad Tumor PortalOR13C5
OASIS PortalOR13C5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR13C5  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOR13C5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR13C5
DgiDB (Drug Gene Interaction Database)OR13C5
DoCM (Curated mutations)OR13C5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR13C5 (select a term)
intoGenOR13C5
Cancer3DOR13C5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenOR13C5
Genetic Testing Registry OR13C5
NextProtQ8NGS8 [Medical]
TSGene138799
GENETestsOR13C5
Target ValidationOR13C5
Huge Navigator OR13C5 [HugePedia]
snp3D : Map Gene to Disease138799
BioCentury BCIQOR13C5
ClinGenOR13C5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD138799
Chemical/Pharm GKB GenePA32035
Clinical trialOR13C5
Miscellaneous
canSAR (ICR)OR13C5 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR13C5
EVEXOR13C5
GoPubMedOR13C5
iHOPOR13C5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 19:23:12 CEST 2017

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