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OR13C8 (olfactory receptor family 13 subfamily C member 8)

Identity

Alias_namesolfactory receptor, family 13, subfamily C, member 8
Other aliasOR37H
OR9-10
HGNC (Hugo) OR13C8
LocusID (NCBI) 138802
Atlas_Id 71191
Location 9q31.1  [Link to chromosome band 9q31]
Location_base_pair Starts at 104569168 and ends at 104570130 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OR13C8   15103
Cards
Entrez_Gene (NCBI)OR13C8  138802  olfactory receptor family 13 subfamily C member 8
AliasesOR37H; OR9-10
GeneCards (Weizmann)OR13C8
Ensembl hg19 (Hinxton)ENSG00000186943 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000186943 [Gene_View]  chr9:104569168-104570130 [Contig_View]  OR13C8 [Vega]
ICGC DataPortalENSG00000186943
TCGA cBioPortalOR13C8
AceView (NCBI)OR13C8
Genatlas (Paris)OR13C8
WikiGenes138802
SOURCE (Princeton)OR13C8
Genetics Home Reference (NIH)OR13C8
Genomic and cartography
GoldenPath hg38 (UCSC)OR13C8  -     chr9:104569168-104570130 +  9q31.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OR13C8  -     9q31.1   [Description]    (hg19-Feb_2009)
EnsemblOR13C8 - 9q31.1 [CytoView hg19]  OR13C8 - 9q31.1 [CytoView hg38]
Mapping of homologs : NCBIOR13C8 [Mapview hg19]  OR13C8 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC140247 BC141625
RefSeq transcript (Entrez)NM_001004483
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OR13C8
Cluster EST : UnigeneHs.553599 [ NCBI ]
CGAP (NCI)Hs.553599
Alternative Splicing GalleryENSG00000186943
Gene ExpressionOR13C8 [ NCBI-GEO ]   OR13C8 [ EBI - ARRAY_EXPRESS ]   OR13C8 [ SEEK ]   OR13C8 [ MEM ]
Gene Expression Viewer (FireBrowse)OR13C8 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)138802
GTEX Portal (Tissue expression)OR13C8
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NGS7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NGS7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NGS7
Splice isoforms : SwissVarQ8NGS7
PhosPhoSitePlusQ8NGS7
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OR13C8
DMDM Disease mutations138802
Blocks (Seattle)OR13C8
SuperfamilyQ8NGS7
Human Protein AtlasENSG00000186943
Peptide AtlasQ8NGS7
HPRD14908
IPIIPI00169117   
Protein Interaction databases
DIP (DOE-UCLA)Q8NGS7
IntAct (EBI)Q8NGS7
FunCoupENSG00000186943
BioGRIDOR13C8
STRING (EMBL)OR13C8
ZODIACOR13C8
Ontologies - Pathways
QuickGOQ8NGS7
Ontology : AmiGOG-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  sensory perception of smell  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBIG-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  sensory perception of smell  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Pathways : KEGGOlfactory transduction   
NDEx NetworkOR13C8
Atlas of Cancer Signalling NetworkOR13C8
Wikipedia pathwaysOR13C8
Orthology - Evolution
OrthoDB138802
GeneTree (enSembl)ENSG00000186943
Phylogenetic Trees/Animal Genes : TreeFamOR13C8
HOVERGENQ8NGS7
HOGENOMQ8NGS7
Homologs : HomoloGeneOR13C8
Homology/Alignments : Family Browser (UCSC)OR13C8
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR13C8 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR13C8
dbVarOR13C8
ClinVarOR13C8
1000_GenomesOR13C8 
Exome Variant ServerOR13C8
ExAC (Exome Aggregation Consortium)OR13C8 (select the gene name)
Genetic variants : HAPMAP138802
Genomic Variants (DGV)OR13C8 [DGVbeta]
DECIPHEROR13C8 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOR13C8 
Mutations
ICGC Data PortalOR13C8 
TCGA Data PortalOR13C8 
Broad Tumor PortalOR13C8
OASIS PortalOR13C8 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR13C8  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOR13C8
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR13C8
DgiDB (Drug Gene Interaction Database)OR13C8
DoCM (Curated mutations)OR13C8 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR13C8 (select a term)
intoGenOR13C8
Cancer3DOR13C8(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenOR13C8
Genetic Testing Registry OR13C8
NextProtQ8NGS7 [Medical]
TSGene138802
GENETestsOR13C8
Target ValidationOR13C8
Huge Navigator OR13C8 [HugePedia]
snp3D : Map Gene to Disease138802
BioCentury BCIQOR13C8
ClinGenOR13C8
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD138802
Chemical/Pharm GKB GenePA32038
Clinical trialOR13C8
Miscellaneous
canSAR (ICR)OR13C8 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR13C8
EVEXOR13C8
GoPubMedOR13C8
iHOPOR13C8
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:32:49 CEST 2017

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