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OR13C9 (olfactory receptor family 13 subfamily C member 9)

Identity

Alias_namesolfactory receptor
Other aliasOR37L
OR9-13
HGNC (Hugo) OR13C9
LocusID (NCBI) 286362
Atlas_Id 53030
Location 9q31.1  [Link to chromosome band 9q31]
Location_base_pair Starts at 104617248 and ends at 104618204 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
C8orf82 (8q24.3) / OR13C9 (9q31.1)JUP (17q21.2) / OR13C9 (9q31.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OR13C9   15104
Cards
Entrez_Gene (NCBI)OR13C9  286362  olfactory receptor family 13 subfamily C member 9
AliasesOR37L; OR9-13
GeneCards (Weizmann)OR13C9
Ensembl hg19 (Hinxton)ENSG00000136839 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000136839 [Gene_View]  chr9:104617248-104618204 [Contig_View]  OR13C9 [Vega]
ICGC DataPortalENSG00000136839
TCGA cBioPortalOR13C9
AceView (NCBI)OR13C9
Genatlas (Paris)OR13C9
WikiGenes286362
SOURCE (Princeton)OR13C9
Genetics Home Reference (NIH)OR13C9
Genomic and cartography
GoldenPath hg38 (UCSC)OR13C9  -     chr9:104617248-104618204 -  9q31.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OR13C9  -     9q31.1   [Description]    (hg19-Feb_2009)
EnsemblOR13C9 - 9q31.1 [CytoView hg19]  OR13C9 - 9q31.1 [CytoView hg38]
Mapping of homologs : NCBIOR13C9 [Mapview hg19]  OR13C9 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC141486 BC148770
RefSeq transcript (Entrez)NM_001001956
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OR13C9
Cluster EST : UnigeneHs.553682 [ NCBI ]
CGAP (NCI)Hs.553682
Alternative Splicing GalleryENSG00000136839
Gene ExpressionOR13C9 [ NCBI-GEO ]   OR13C9 [ EBI - ARRAY_EXPRESS ]   OR13C9 [ SEEK ]   OR13C9 [ MEM ]
Gene Expression Viewer (FireBrowse)OR13C9 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)286362
GTEX Portal (Tissue expression)OR13C9
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NGT0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NGT0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NGT0
Splice isoforms : SwissVarQ8NGT0
PhosPhoSitePlusQ8NGT0
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OR13C9
DMDM Disease mutations286362
Blocks (Seattle)OR13C9
SuperfamilyQ8NGT0
Human Protein AtlasENSG00000136839
Peptide AtlasQ8NGT0
HPRD14909
IPIIPI00169121   
Protein Interaction databases
DIP (DOE-UCLA)Q8NGT0
IntAct (EBI)Q8NGT0
FunCoupENSG00000136839
BioGRIDOR13C9
STRING (EMBL)OR13C9
ZODIACOR13C9
Ontologies - Pathways
QuickGOQ8NGT0
Ontology : AmiGOG-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  sensory perception of smell  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBIG-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  sensory perception of smell  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Pathways : KEGGOlfactory transduction   
NDEx NetworkOR13C9
Atlas of Cancer Signalling NetworkOR13C9
Wikipedia pathwaysOR13C9
Orthology - Evolution
OrthoDB286362
GeneTree (enSembl)ENSG00000136839
Phylogenetic Trees/Animal Genes : TreeFamOR13C9
HOVERGENQ8NGT0
HOGENOMQ8NGT0
Homologs : HomoloGeneOR13C9
Homology/Alignments : Family Browser (UCSC)OR13C9
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR13C9 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR13C9
dbVarOR13C9
ClinVarOR13C9
1000_GenomesOR13C9 
Exome Variant ServerOR13C9
ExAC (Exome Aggregation Consortium)OR13C9 (select the gene name)
Genetic variants : HAPMAP286362
Genomic Variants (DGV)OR13C9 [DGVbeta]
DECIPHEROR13C9 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOR13C9 
Mutations
ICGC Data PortalOR13C9 
TCGA Data PortalOR13C9 
Broad Tumor PortalOR13C9
OASIS PortalOR13C9 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR13C9  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOR13C9
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR13C9
DgiDB (Drug Gene Interaction Database)OR13C9
DoCM (Curated mutations)OR13C9 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR13C9 (select a term)
intoGenOR13C9
Cancer3DOR13C9(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenOR13C9
Genetic Testing Registry OR13C9
NextProtQ8NGT0 [Medical]
TSGene286362
GENETestsOR13C9
Target ValidationOR13C9
Huge Navigator OR13C9 [HugePedia]
snp3D : Map Gene to Disease286362
BioCentury BCIQOR13C9
ClinGenOR13C9
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD286362
Chemical/Pharm GKB GenePA32039
Clinical trialOR13C9
Miscellaneous
canSAR (ICR)OR13C9 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR13C9
EVEXOR13C9
GoPubMedOR13C9
iHOPOR13C9
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 19:23:13 CEST 2017

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