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OR13D1 (olfactory receptor family 13 subfamily D member 1)

Identity

Alias_namesolfactory receptor, family 13, subfamily D, member 1
Other aliasOR9-15
HGNC (Hugo) OR13D1
LocusID (NCBI) 286365
Atlas_Id 71192
Location 9q31.1  [Link to chromosome band 9q31]
Location_base_pair Starts at 104694422 and ends at 104695462 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OR13D1   14695
Cards
Entrez_Gene (NCBI)OR13D1  286365  olfactory receptor family 13 subfamily D member 1
AliasesOR9-15
GeneCards (Weizmann)OR13D1
Ensembl hg19 (Hinxton)ENSG00000179055 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000179055 [Gene_View]  chr9:104694422-104695462 [Contig_View]  OR13D1 [Vega]
ICGC DataPortalENSG00000179055
TCGA cBioPortalOR13D1
AceView (NCBI)OR13D1
Genatlas (Paris)OR13D1
WikiGenes286365
SOURCE (Princeton)OR13D1
Genetics Home Reference (NIH)OR13D1
Genomic and cartography
GoldenPath hg38 (UCSC)OR13D1  -     chr9:104694422-104695462 +  9q31.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OR13D1  -     9q31.1   [Description]    (hg19-Feb_2009)
EnsemblOR13D1 - 9q31.1 [CytoView hg19]  OR13D1 - 9q31.1 [CytoView hg38]
Mapping of homologs : NCBIOR13D1 [Mapview hg19]  OR13D1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC140916
RefSeq transcript (Entrez)NM_001004484
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OR13D1
Cluster EST : UnigeneHs.553683 [ NCBI ]
CGAP (NCI)Hs.553683
Alternative Splicing GalleryENSG00000179055
Gene ExpressionOR13D1 [ NCBI-GEO ]   OR13D1 [ EBI - ARRAY_EXPRESS ]   OR13D1 [ SEEK ]   OR13D1 [ MEM ]
Gene Expression Viewer (FireBrowse)OR13D1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)286365
GTEX Portal (Tissue expression)OR13D1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NGV5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NGV5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NGV5
Splice isoforms : SwissVarQ8NGV5
PhosPhoSitePlusQ8NGV5
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt    OR13D1   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OR13D1
DMDM Disease mutations286365
Blocks (Seattle)OR13D1
SuperfamilyQ8NGV5
Human Protein AtlasENSG00000179055
Peptide AtlasQ8NGV5
HPRD14910
IPIIPI00374256   
Protein Interaction databases
DIP (DOE-UCLA)Q8NGV5
IntAct (EBI)Q8NGV5
FunCoupENSG00000179055
BioGRIDOR13D1
STRING (EMBL)OR13D1
ZODIACOR13D1
Ontologies - Pathways
QuickGOQ8NGV5
Ontology : AmiGOG-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  sensory perception of smell  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBIG-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  sensory perception of smell  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Pathways : KEGGOlfactory transduction   
NDEx NetworkOR13D1
Atlas of Cancer Signalling NetworkOR13D1
Wikipedia pathwaysOR13D1
Orthology - Evolution
OrthoDB286365
GeneTree (enSembl)ENSG00000179055
Phylogenetic Trees/Animal Genes : TreeFamOR13D1
HOVERGENQ8NGV5
HOGENOMQ8NGV5
Homologs : HomoloGeneOR13D1
Homology/Alignments : Family Browser (UCSC)OR13D1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR13D1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR13D1
dbVarOR13D1
ClinVarOR13D1
1000_GenomesOR13D1 
Exome Variant ServerOR13D1
ExAC (Exome Aggregation Consortium)OR13D1 (select the gene name)
Genetic variants : HAPMAP286365
Genomic Variants (DGV)OR13D1 [DGVbeta]
DECIPHEROR13D1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOR13D1 
Mutations
ICGC Data PortalOR13D1 
TCGA Data PortalOR13D1 
Broad Tumor PortalOR13D1
OASIS PortalOR13D1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR13D1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOR13D1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR13D1
DgiDB (Drug Gene Interaction Database)OR13D1
DoCM (Curated mutations)OR13D1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR13D1 (select a term)
intoGenOR13D1
Cancer3DOR13D1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenOR13D1
Genetic Testing Registry OR13D1
NextProtQ8NGV5 [Medical]
TSGene286365
GENETestsOR13D1
Target ValidationOR13D1
Huge Navigator OR13D1 [HugePedia]
snp3D : Map Gene to Disease286365
BioCentury BCIQOR13D1
ClinGenOR13D1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD286365
Chemical/Pharm GKB GenePA32040
Clinical trialOR13D1
Miscellaneous
canSAR (ICR)OR13D1 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR13D1
EVEXOR13D1
GoPubMedOR13D1
iHOPOR13D1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:33:51 CEST 2017

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