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OR13F1 (olfactory receptor family 13 subfamily F member 1)

Identity

Alias_namesolfactory receptor, family 13, subfamily F, member 1
Other aliasOR9-6
HGNC (Hugo) OR13F1
LocusID (NCBI) 138805
Atlas_Id 71193
Location 9q31.1  [Link to chromosome band 9q31]
Location_base_pair Starts at 104504263 and ends at 104505222 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OR13F1   14723
Cards
Entrez_Gene (NCBI)OR13F1  138805  olfactory receptor family 13 subfamily F member 1
AliasesOR9-6
GeneCards (Weizmann)OR13F1
Ensembl hg19 (Hinxton)ENSG00000186881 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000186881 [Gene_View]  chr9:104504263-104505222 [Contig_View]  OR13F1 [Vega]
ICGC DataPortalENSG00000186881
TCGA cBioPortalOR13F1
AceView (NCBI)OR13F1
Genatlas (Paris)OR13F1
WikiGenes138805
SOURCE (Princeton)OR13F1
Genetics Home Reference (NIH)OR13F1
Genomic and cartography
GoldenPath hg38 (UCSC)OR13F1  -     chr9:104504263-104505222 +  9q31.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OR13F1  -     9q31.1   [Description]    (hg19-Feb_2009)
EnsemblOR13F1 - 9q31.1 [CytoView hg19]  OR13F1 - 9q31.1 [CytoView hg38]
Mapping of homologs : NCBIOR13F1 [Mapview hg19]  OR13F1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC140739
RefSeq transcript (Entrez)NM_001004485
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OR13F1
Cluster EST : UnigeneHs.553602 [ NCBI ]
CGAP (NCI)Hs.553602
Alternative Splicing GalleryENSG00000186881
Gene ExpressionOR13F1 [ NCBI-GEO ]   OR13F1 [ EBI - ARRAY_EXPRESS ]   OR13F1 [ SEEK ]   OR13F1 [ MEM ]
Gene Expression Viewer (FireBrowse)OR13F1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)138805
GTEX Portal (Tissue expression)OR13F1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NGS4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NGS4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NGS4
Splice isoforms : SwissVarQ8NGS4
PhosPhoSitePlusQ8NGS4
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OR13F1
DMDM Disease mutations138805
Blocks (Seattle)OR13F1
SuperfamilyQ8NGS4
Human Protein AtlasENSG00000186881
Peptide AtlasQ8NGS4
HPRD14911
IPIIPI00303630   
Protein Interaction databases
DIP (DOE-UCLA)Q8NGS4
IntAct (EBI)Q8NGS4
FunCoupENSG00000186881
BioGRIDOR13F1
STRING (EMBL)OR13F1
ZODIACOR13F1
Ontologies - Pathways
QuickGOQ8NGS4
Ontology : AmiGOdopamine neurotransmitter receptor activity, coupled via Gi/Go  synaptic transmission, dopaminergic  adrenergic receptor activity  olfactory receptor activity  plasma membrane  integral component of plasma membrane  negative regulation of adenylate cyclase activity  adenylate cyclase-inhibiting dopamine receptor signaling pathway  response to toxic substance  regulation of dopamine secretion  synaptic vesicle membrane  dopamine binding  response to drug  regulation of potassium ion transport  behavioral response to cocaine  behavioral response to ethanol  detection of chemical stimulus involved in sensory perception of smell  negative regulation of cytosolic calcium ion concentration  negative regulation of synaptic transmission, glutamatergic  phospholipase C-activating dopamine receptor signaling pathway  adenylate cyclase-activating adrenergic receptor signaling pathway  negative regulation of voltage-gated calcium channel activity  
Ontology : EGO-EBIdopamine neurotransmitter receptor activity, coupled via Gi/Go  synaptic transmission, dopaminergic  adrenergic receptor activity  olfactory receptor activity  plasma membrane  integral component of plasma membrane  negative regulation of adenylate cyclase activity  adenylate cyclase-inhibiting dopamine receptor signaling pathway  response to toxic substance  regulation of dopamine secretion  synaptic vesicle membrane  dopamine binding  response to drug  regulation of potassium ion transport  behavioral response to cocaine  behavioral response to ethanol  detection of chemical stimulus involved in sensory perception of smell  negative regulation of cytosolic calcium ion concentration  negative regulation of synaptic transmission, glutamatergic  phospholipase C-activating dopamine receptor signaling pathway  adenylate cyclase-activating adrenergic receptor signaling pathway  negative regulation of voltage-gated calcium channel activity  
Pathways : KEGGOlfactory transduction   
NDEx NetworkOR13F1
Atlas of Cancer Signalling NetworkOR13F1
Wikipedia pathwaysOR13F1
Orthology - Evolution
OrthoDB138805
GeneTree (enSembl)ENSG00000186881
Phylogenetic Trees/Animal Genes : TreeFamOR13F1
HOVERGENQ8NGS4
HOGENOMQ8NGS4
Homologs : HomoloGeneOR13F1
Homology/Alignments : Family Browser (UCSC)OR13F1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR13F1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR13F1
dbVarOR13F1
ClinVarOR13F1
1000_GenomesOR13F1 
Exome Variant ServerOR13F1
ExAC (Exome Aggregation Consortium)OR13F1 (select the gene name)
Genetic variants : HAPMAP138805
Genomic Variants (DGV)OR13F1 [DGVbeta]
DECIPHEROR13F1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOR13F1 
Mutations
ICGC Data PortalOR13F1 
TCGA Data PortalOR13F1 
Broad Tumor PortalOR13F1
OASIS PortalOR13F1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR13F1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOR13F1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR13F1
DgiDB (Drug Gene Interaction Database)OR13F1
DoCM (Curated mutations)OR13F1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR13F1 (select a term)
intoGenOR13F1
Cancer3DOR13F1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenOR13F1
Genetic Testing Registry OR13F1
NextProtQ8NGS4 [Medical]
TSGene138805
GENETestsOR13F1
Target ValidationOR13F1
Huge Navigator OR13F1 [HugePedia]
snp3D : Map Gene to Disease138805
BioCentury BCIQOR13F1
ClinGenOR13F1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD138805
Chemical/Pharm GKB GenePA32045
Clinical trialOR13F1
Miscellaneous
canSAR (ICR)OR13F1 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR13F1
EVEXOR13F1
GoPubMedOR13F1
iHOPOR13F1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:33:51 CEST 2017

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