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OR13H1 (olfactory receptor family 13 subfamily H member 1)

Identity

Alias_namesolfactory receptor, family 13, subfamily H, member 1
Other aliasORX1
HGNC (Hugo) OR13H1
LocusID (NCBI) 347468
Atlas_Id 71195
Location Xq26.2  [Link to chromosome band Xq26]
Location_base_pair Starts at 131544074 and ends at 131545000 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OR13H1   14755
Cards
Entrez_Gene (NCBI)OR13H1  347468  olfactory receptor family 13 subfamily H member 1
AliasesORX1
GeneCards (Weizmann)OR13H1
Ensembl hg19 (Hinxton)ENSG00000171054 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000171054 [Gene_View]  chrX:131544074-131545000 [Contig_View]  OR13H1 [Vega]
ICGC DataPortalENSG00000171054
TCGA cBioPortalOR13H1
AceView (NCBI)OR13H1
Genatlas (Paris)OR13H1
WikiGenes347468
SOURCE (Princeton)OR13H1
Genetics Home Reference (NIH)OR13H1
Genomic and cartography
GoldenPath hg38 (UCSC)OR13H1  -     chrX:131544074-131545000 +  Xq26.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OR13H1  -     Xq26.2   [Description]    (hg19-Feb_2009)
EnsemblOR13H1 - Xq26.2 [CytoView hg19]  OR13H1 - Xq26.2 [CytoView hg38]
Mapping of homologs : NCBIOR13H1 [Mapview hg19]  OR13H1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC137050
RefSeq transcript (Entrez)NM_001004486
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OR13H1
Cluster EST : UnigeneHs.714693 [ NCBI ]
CGAP (NCI)Hs.714693
Alternative Splicing GalleryENSG00000171054
Gene ExpressionOR13H1 [ NCBI-GEO ]   OR13H1 [ EBI - ARRAY_EXPRESS ]   OR13H1 [ SEEK ]   OR13H1 [ MEM ]
Gene Expression Viewer (FireBrowse)OR13H1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)347468
GTEX Portal (Tissue expression)OR13H1
Human Protein AtlasENSG00000171054-OR13H1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NG92   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NG92  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NG92
Splice isoforms : SwissVarQ8NG92
PhosPhoSitePlusQ8NG92
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OR13H1
DMDM Disease mutations347468
Blocks (Seattle)OR13H1
SuperfamilyQ8NG92
Human Protein Atlas [tissue]ENSG00000171054-OR13H1 [tissue]
Peptide AtlasQ8NG92
HPRD18600
IPIIPI00303226   
Protein Interaction databases
DIP (DOE-UCLA)Q8NG92
IntAct (EBI)Q8NG92
FunCoupENSG00000171054
BioGRIDOR13H1
STRING (EMBL)OR13H1
ZODIACOR13H1
Ontologies - Pathways
QuickGOQ8NG92
Ontology : AmiGOG-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  sensory perception of smell  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBIG-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  sensory perception of smell  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Pathways : KEGGOlfactory transduction   
NDEx NetworkOR13H1
Atlas of Cancer Signalling NetworkOR13H1
Wikipedia pathwaysOR13H1
Orthology - Evolution
OrthoDB347468
GeneTree (enSembl)ENSG00000171054
Phylogenetic Trees/Animal Genes : TreeFamOR13H1
HOVERGENQ8NG92
HOGENOMQ8NG92
Homologs : HomoloGeneOR13H1
Homology/Alignments : Family Browser (UCSC)OR13H1
Gene fusions - Rearrangements
Fusion: Tumor Portal OR13H1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR13H1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR13H1
dbVarOR13H1
ClinVarOR13H1
1000_GenomesOR13H1 
Exome Variant ServerOR13H1
ExAC (Exome Aggregation Consortium)ENSG00000171054
GNOMAD BrowserENSG00000171054
Genetic variants : HAPMAP347468
Genomic Variants (DGV)OR13H1 [DGVbeta]
DECIPHEROR13H1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOR13H1 
Mutations
ICGC Data PortalOR13H1 
TCGA Data PortalOR13H1 
Broad Tumor PortalOR13H1
OASIS PortalOR13H1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR13H1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOR13H1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR13H1
DgiDB (Drug Gene Interaction Database)OR13H1
DoCM (Curated mutations)OR13H1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR13H1 (select a term)
intoGenOR13H1
Cancer3DOR13H1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenOR13H1
Genetic Testing Registry OR13H1
NextProtQ8NG92 [Medical]
TSGene347468
GENETestsOR13H1
Target ValidationOR13H1
Huge Navigator OR13H1 [HugePedia]
snp3D : Map Gene to Disease347468
BioCentury BCIQOR13H1
ClinGenOR13H1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD347468
Chemical/Pharm GKB GenePA32047
Clinical trialOR13H1
Miscellaneous
canSAR (ICR)OR13H1 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR13H1
EVEXOR13H1
GoPubMedOR13H1
iHOPOR13H1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 12:20:07 CET 2017

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