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OR13J1 (olfactory receptor, family 13, subfamily J, member 1)

Identity

Alias_namesolfactory receptor, family 13, subfamily J, member 1
Other aliasOR9-2
HGNC (Hugo) OR13J1
LocusID (NCBI) 392309
Atlas_Id 71196
Location 9p13.3  [Link to chromosome band 9p13]
Location_base_pair Starts at 35869460 and ends at 35870398 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OR13J1   15108
Cards
Entrez_Gene (NCBI)OR13J1  392309  olfactory receptor, family 13, subfamily J, member 1
AliasesOR9-2
GeneCards (Weizmann)OR13J1
Ensembl hg19 (Hinxton) [Gene_View]  chr9:35869460-35870398 [Contig_View]  OR13J1 [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr9:35869460-35870398 [Contig_View]  OR13J1 [Vega]
TCGA cBioPortalOR13J1
AceView (NCBI)OR13J1
Genatlas (Paris)OR13J1
WikiGenes392309
SOURCE (Princeton)OR13J1
Genetics Home Reference (NIH)OR13J1
Genomic and cartography
GoldenPath hg19 (UCSC)OR13J1  -     chr9:35869460-35870398 -  9p13.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)OR13J1  -     9p13.3   [Description]    (hg38-Dec_2013)
EnsemblOR13J1 - 9p13.3 [CytoView hg19]  OR13J1 - 9p13.3 [CytoView hg38]
Mapping of homologs : NCBIOR13J1 [Mapview hg19]  OR13J1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AY726589 BC136715 BC136716
RefSeq transcript (Entrez)NM_001004487
RefSeq genomic (Entrez)NC_000009 NC_018920 NT_008413 NW_004929342
Consensus coding sequences : CCDS (NCBI)OR13J1
Cluster EST : UnigeneHs.527480 [ NCBI ]
CGAP (NCI)Hs.527480
Gene ExpressionOR13J1 [ NCBI-GEO ]   OR13J1 [ EBI - ARRAY_EXPRESS ]   OR13J1 [ SEEK ]   OR13J1 [ MEM ]
Gene Expression Viewer (FireBrowse)OR13J1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)392309
GTEX Portal (Tissue expression)OR13J1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NGT2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NGT2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NGT2
Splice isoforms : SwissVarQ8NGT2
PhosPhoSitePlusQ8NGT2
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OR13J1
DMDM Disease mutations392309
Blocks (Seattle)OR13J1
SuperfamilyQ8NGT2
Peptide AtlasQ8NGT2
HPRD14912
IPIIPI00169124   
Protein Interaction databases
DIP (DOE-UCLA)Q8NGT2
IntAct (EBI)Q8NGT2
BioGRIDOR13J1
STRING (EMBL)OR13J1
ZODIACOR13J1
Ontologies - Pathways
QuickGOQ8NGT2
Ontology : AmiGOG-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  sensory perception of smell  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBIG-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  sensory perception of smell  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  detection of chemical stimulus involved in sensory perception of smell  
Pathways : KEGGOlfactory transduction   
NDEx NetworkOR13J1
Atlas of Cancer Signalling NetworkOR13J1
Wikipedia pathwaysOR13J1
Orthology - Evolution
OrthoDB392309
Phylogenetic Trees/Animal Genes : TreeFamOR13J1
HOVERGENQ8NGT2
HOGENOMQ8NGT2
Homologs : HomoloGeneOR13J1
Homology/Alignments : Family Browser (UCSC)OR13J1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR13J1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR13J1
dbVarOR13J1
ClinVarOR13J1
1000_GenomesOR13J1 
Exome Variant ServerOR13J1
ExAC (Exome Aggregation Consortium)OR13J1 (select the gene name)
Genetic variants : HAPMAP392309
Genomic Variants (DGV)OR13J1 [DGVbeta]
DECIPHER (Syndromes)9:35869460-35870398  
CONAN: Copy Number AnalysisOR13J1 
Mutations
ICGC Data PortalOR13J1 
TCGA Data PortalOR13J1 
Broad Tumor PortalOR13J1
OASIS PortalOR13J1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR13J1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOR13J1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR13J1
DgiDB (Drug Gene Interaction Database)OR13J1
DoCM (Curated mutations)OR13J1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR13J1 (select a term)
intoGenOR13J1
Cancer3DOR13J1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenOR13J1
Genetic Testing Registry OR13J1
NextProtQ8NGT2 [Medical]
TSGene392309
GENETestsOR13J1
Huge Navigator OR13J1 [HugePedia]
snp3D : Map Gene to Disease392309
BioCentury BCIQOR13J1
ClinGenOR13J1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD392309
Chemical/Pharm GKB GenePA32049
Clinical trialOR13J1
Miscellaneous
canSAR (ICR)OR13J1 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR13J1
EVEXOR13J1
GoPubMedOR13J1
iHOPOR13J1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:36:08 CET 2017

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