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OR14A16 (olfactory receptor, family 14, subfamily A, member 16)

Identity

Alias_namesOR5AT1
olfactory receptor, family 5, subfamily AT, member 1
olfactory receptor, family 14, subfamily A, member 16
Other alias
HGNC (Hugo) OR14A16
LocusID (NCBI) 284532
Atlas_Id 71197
Location 1q44  [Link to chromosome band 1q44]
Location_base_pair Starts at 247978102 and ends at 247979031 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OR14A16   15022
Cards
Entrez_Gene (NCBI)OR14A16  284532  olfactory receptor, family 14, subfamily A, member 16
AliasesOR5AT1
GeneCards (Weizmann)OR14A16
Ensembl hg19 (Hinxton)ENSG00000196772 [Gene_View]  chr1:247978102-247979031 [Contig_View]  OR14A16 [Vega]
Ensembl hg38 (Hinxton)ENSG00000196772 [Gene_View]  chr1:247978102-247979031 [Contig_View]  OR14A16 [Vega]
ICGC DataPortalENSG00000196772
TCGA cBioPortalOR14A16
AceView (NCBI)OR14A16
Genatlas (Paris)OR14A16
WikiGenes284532
SOURCE (Princeton)OR14A16
Genetics Home Reference (NIH)OR14A16
Genomic and cartography
GoldenPath hg19 (UCSC)OR14A16  -     chr1:247978102-247979031 -  1q44   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)OR14A16  -     1q44   [Description]    (hg38-Dec_2013)
EnsemblOR14A16 - 1q44 [CytoView hg19]  OR14A16 - 1q44 [CytoView hg38]
Mapping of homologs : NCBIOR14A16 [Mapview hg19]  OR14A16 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC140460 BC148709
RefSeq transcript (Entrez)NM_001001966
RefSeq genomic (Entrez)NC_000001 NC_018912 NT_167186 NW_004929294
Consensus coding sequences : CCDS (NCBI)OR14A16
Cluster EST : UnigeneHs.626620 [ NCBI ]
CGAP (NCI)Hs.626620
Alternative Splicing GalleryENSG00000196772
Gene ExpressionOR14A16 [ NCBI-GEO ]   OR14A16 [ EBI - ARRAY_EXPRESS ]   OR14A16 [ SEEK ]   OR14A16 [ MEM ]
Gene Expression Viewer (FireBrowse)OR14A16 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)284532
GTEX Portal (Tissue expression)OR14A16
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NHC5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NHC5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NHC5
Splice isoforms : SwissVarQ8NHC5
PhosPhoSitePlusQ8NHC5
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OR14A16
DMDM Disease mutations284532
Blocks (Seattle)OR14A16
SuperfamilyQ8NHC5
Human Protein AtlasENSG00000196772
Peptide AtlasQ8NHC5
HPRD15033
IPIIPI00169253   
Protein Interaction databases
DIP (DOE-UCLA)Q8NHC5
IntAct (EBI)Q8NHC5
FunCoupENSG00000196772
BioGRIDOR14A16
STRING (EMBL)OR14A16
ZODIACOR14A16
Ontologies - Pathways
QuickGOQ8NHC5
Ontology : AmiGOG-protein coupled receptor activity  olfactory receptor activity  odorant binding  plasma membrane  integral component of plasma membrane  G-protein coupled receptor signaling pathway  sensory perception of smell  detection of chemical stimulus involved in sensory perception of smell  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBIG-protein coupled receptor activity  olfactory receptor activity  odorant binding  plasma membrane  integral component of plasma membrane  G-protein coupled receptor signaling pathway  sensory perception of smell  detection of chemical stimulus involved in sensory perception of smell  detection of chemical stimulus involved in sensory perception of smell  
Pathways : KEGGOlfactory transduction   
NDEx NetworkOR14A16
Atlas of Cancer Signalling NetworkOR14A16
Wikipedia pathwaysOR14A16
Orthology - Evolution
OrthoDB284532
GeneTree (enSembl)ENSG00000196772
Phylogenetic Trees/Animal Genes : TreeFamOR14A16
HOVERGENQ8NHC5
HOGENOMQ8NHC5
Homologs : HomoloGeneOR14A16
Homology/Alignments : Family Browser (UCSC)OR14A16
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR14A16 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR14A16
dbVarOR14A16
ClinVarOR14A16
1000_GenomesOR14A16 
Exome Variant ServerOR14A16
ExAC (Exome Aggregation Consortium)OR14A16 (select the gene name)
Genetic variants : HAPMAP284532
Genomic Variants (DGV)OR14A16 [DGVbeta]
DECIPHER (Syndromes)1:247978102-247979031  ENSG00000196772
CONAN: Copy Number AnalysisOR14A16 
Mutations
ICGC Data PortalOR14A16 
TCGA Data PortalOR14A16 
Broad Tumor PortalOR14A16
OASIS PortalOR14A16 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR14A16  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOR14A16
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR14A16
DgiDB (Drug Gene Interaction Database)OR14A16
DoCM (Curated mutations)OR14A16 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR14A16 (select a term)
intoGenOR14A16
Cancer3DOR14A16(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenOR14A16
Genetic Testing Registry OR14A16
NextProtQ8NHC5 [Medical]
TSGene284532
GENETestsOR14A16
Huge Navigator OR14A16 [HugePedia]
snp3D : Map Gene to Disease284532
BioCentury BCIQOR14A16
ClinGenOR14A16
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD284532
Chemical/Pharm GKB GenePA162398441
Clinical trialOR14A16
Miscellaneous
canSAR (ICR)OR14A16 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR14A16
EVEXOR14A16
GoPubMedOR14A16
iHOPOR14A16
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:36:08 CET 2017

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