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OR1A1 (olfactory receptor family 1 subfamily A member 1)

Identity

Alias_namesolfactory receptor, family 1, subfamily A, member 1
Alias_symbol (synonym)OR17-7
Other alias
HGNC (Hugo) OR1A1
LocusID (NCBI) 8383
Atlas_Id 71201
Location 17p13.3  [Link to chromosome band 17p13]
Location_base_pair Starts at 3215621 and ends at 3216550 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OR1A1   8179
Cards
Entrez_Gene (NCBI)OR1A1  8383  olfactory receptor family 1 subfamily A member 1
AliasesOR17-7
GeneCards (Weizmann)OR1A1
Ensembl hg19 (Hinxton)ENSG00000172146 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000172146 [Gene_View]  chr17:3215621-3216550 [Contig_View]  OR1A1 [Vega]
ICGC DataPortalENSG00000172146
TCGA cBioPortalOR1A1
AceView (NCBI)OR1A1
Genatlas (Paris)OR1A1
WikiGenes8383
SOURCE (Princeton)OR1A1
Genetics Home Reference (NIH)OR1A1
Genomic and cartography
GoldenPath hg38 (UCSC)OR1A1  -     chr17:3215621-3216550 +  17p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OR1A1  -     17p13.3   [Description]    (hg19-Feb_2009)
EnsemblOR1A1 - 17p13.3 [CytoView hg19]  OR1A1 - 17p13.3 [CytoView hg38]
Mapping of homologs : NCBIOR1A1 [Mapview hg19]  OR1A1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC069169 BC128248 BC141934 BC141935
RefSeq transcript (Entrez)NM_014565
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OR1A1
Cluster EST : UnigeneHs.532688 [ NCBI ]
CGAP (NCI)Hs.532688
Alternative Splicing GalleryENSG00000172146
Gene ExpressionOR1A1 [ NCBI-GEO ]   OR1A1 [ EBI - ARRAY_EXPRESS ]   OR1A1 [ SEEK ]   OR1A1 [ MEM ]
Gene Expression Viewer (FireBrowse)OR1A1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)8383
GTEX Portal (Tissue expression)OR1A1
Human Protein AtlasENSG00000172146-OR1A1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9P1Q5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9P1Q5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9P1Q5
Splice isoforms : SwissVarQ9P1Q5
PhosPhoSitePlusQ9P1Q5
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OR1A1
DMDM Disease mutations8383
Blocks (Seattle)OR1A1
SuperfamilyQ9P1Q5
Human Protein Atlas [tissue]ENSG00000172146-OR1A1 [tissue]
Peptide AtlasQ9P1Q5
HPRD17681
IPIIPI00001631   
Protein Interaction databases
DIP (DOE-UCLA)Q9P1Q5
IntAct (EBI)Q9P1Q5
FunCoupENSG00000172146
BioGRIDOR1A1
STRING (EMBL)OR1A1
ZODIACOR1A1
Ontologies - Pathways
QuickGOQ9P1Q5
Ontology : AmiGOG-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBIG-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Pathways : KEGGOlfactory transduction   
NDEx NetworkOR1A1
Atlas of Cancer Signalling NetworkOR1A1
Wikipedia pathwaysOR1A1
Orthology - Evolution
OrthoDB8383
GeneTree (enSembl)ENSG00000172146
Phylogenetic Trees/Animal Genes : TreeFamOR1A1
HOVERGENQ9P1Q5
HOGENOMQ9P1Q5
Homologs : HomoloGeneOR1A1
Homology/Alignments : Family Browser (UCSC)OR1A1
Gene fusions - Rearrangements
Fusion: Tumor Portal OR1A1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR1A1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR1A1
dbVarOR1A1
ClinVarOR1A1
1000_GenomesOR1A1 
Exome Variant ServerOR1A1
ExAC (Exome Aggregation Consortium)ENSG00000172146
GNOMAD BrowserENSG00000172146
Genetic variants : HAPMAP8383
Genomic Variants (DGV)OR1A1 [DGVbeta]
DECIPHEROR1A1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOR1A1 
Mutations
ICGC Data PortalOR1A1 
TCGA Data PortalOR1A1 
Broad Tumor PortalOR1A1
OASIS PortalOR1A1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR1A1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOR1A1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR1A1
DgiDB (Drug Gene Interaction Database)OR1A1
DoCM (Curated mutations)OR1A1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR1A1 (select a term)
intoGenOR1A1
Cancer3DOR1A1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenOR1A1
Genetic Testing Registry OR1A1
NextProtQ9P1Q5 [Medical]
TSGene8383
GENETestsOR1A1
Target ValidationOR1A1
Huge Navigator OR1A1 [HugePedia]
snp3D : Map Gene to Disease8383
BioCentury BCIQOR1A1
ClinGenOR1A1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD8383
Chemical/Pharm GKB GenePA32051
Clinical trialOR1A1
Miscellaneous
canSAR (ICR)OR1A1 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR1A1
EVEXOR1A1
GoPubMedOR1A1
iHOPOR1A1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 12:20:09 CET 2017

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