Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

OR1A2 (olfactory receptor family 1 subfamily A member 2)

Identity

Alias_namesolfactory receptor, family 1, subfamily A, member 2
Alias_symbol (synonym)OR17-6
Other alias
HGNC (Hugo) OR1A2
LocusID (NCBI) 26189
Atlas_Id 71202
Location 17p13.3  [Link to chromosome band 17p13]
Location_base_pair Starts at 3197517 and ends at 3198448 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OR1A2   8180
Cards
Entrez_Gene (NCBI)OR1A2  26189  olfactory receptor family 1 subfamily A member 2
AliasesOR17-6
GeneCards (Weizmann)OR1A2
Ensembl hg19 (Hinxton)ENSG00000172150 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000172150 [Gene_View]  chr17:3197517-3198448 [Contig_View]  OR1A2 [Vega]
ICGC DataPortalENSG00000172150
TCGA cBioPortalOR1A2
AceView (NCBI)OR1A2
Genatlas (Paris)OR1A2
WikiGenes26189
SOURCE (Princeton)OR1A2
Genetics Home Reference (NIH)OR1A2
Genomic and cartography
GoldenPath hg38 (UCSC)OR1A2  -     chr17:3197517-3198448 +  17p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OR1A2  -     17p13.3   [Description]    (hg19-Feb_2009)
EnsemblOR1A2 - 17p13.3 [CytoView hg19]  OR1A2 - 17p13.3 [CytoView hg38]
Mapping of homologs : NCBIOR1A2 [Mapview hg19]  OR1A2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC069092 BC106733 BC106734
RefSeq transcript (Entrez)NM_012352
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OR1A2
Cluster EST : UnigeneHs.532660 [ NCBI ]
CGAP (NCI)Hs.532660
Alternative Splicing GalleryENSG00000172150
Gene ExpressionOR1A2 [ NCBI-GEO ]   OR1A2 [ EBI - ARRAY_EXPRESS ]   OR1A2 [ SEEK ]   OR1A2 [ MEM ]
Gene Expression Viewer (FireBrowse)OR1A2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)26189
GTEX Portal (Tissue expression)OR1A2
Human Protein AtlasENSG00000172150-OR1A2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y585   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y585  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y585
Splice isoforms : SwissVarQ9Y585
PhosPhoSitePlusQ9Y585
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OR1A2
DMDM Disease mutations26189
Blocks (Seattle)OR1A2
SuperfamilyQ9Y585
Human Protein Atlas [tissue]ENSG00000172150-OR1A2 [tissue]
Peptide AtlasQ9Y585
HPRD17682
IPIIPI00001143   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y585
IntAct (EBI)Q9Y585
FunCoupENSG00000172150
BioGRIDOR1A2
STRING (EMBL)OR1A2
ZODIACOR1A2
Ontologies - Pathways
QuickGOQ9Y585
Ontology : AmiGOG-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  positive regulation of cytokinesis  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBIG-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  positive regulation of cytokinesis  detection of chemical stimulus involved in sensory perception of smell  
Pathways : KEGGOlfactory transduction   
NDEx NetworkOR1A2
Atlas of Cancer Signalling NetworkOR1A2
Wikipedia pathwaysOR1A2
Orthology - Evolution
OrthoDB26189
GeneTree (enSembl)ENSG00000172150
Phylogenetic Trees/Animal Genes : TreeFamOR1A2
HOVERGENQ9Y585
HOGENOMQ9Y585
Homologs : HomoloGeneOR1A2
Homology/Alignments : Family Browser (UCSC)OR1A2
Gene fusions - Rearrangements
Fusion: Tumor Portal OR1A2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR1A2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR1A2
dbVarOR1A2
ClinVarOR1A2
1000_GenomesOR1A2 
Exome Variant ServerOR1A2
ExAC (Exome Aggregation Consortium)ENSG00000172150
GNOMAD BrowserENSG00000172150
Genetic variants : HAPMAP26189
Genomic Variants (DGV)OR1A2 [DGVbeta]
DECIPHEROR1A2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOR1A2 
Mutations
ICGC Data PortalOR1A2 
TCGA Data PortalOR1A2 
Broad Tumor PortalOR1A2
OASIS PortalOR1A2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR1A2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOR1A2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR1A2
DgiDB (Drug Gene Interaction Database)OR1A2
DoCM (Curated mutations)OR1A2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR1A2 (select a term)
intoGenOR1A2
Cancer3DOR1A2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenOR1A2
Genetic Testing Registry OR1A2
NextProtQ9Y585 [Medical]
TSGene26189
GENETestsOR1A2
Target ValidationOR1A2
Huge Navigator OR1A2 [HugePedia]
snp3D : Map Gene to Disease26189
BioCentury BCIQOR1A2
ClinGenOR1A2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD26189
Chemical/Pharm GKB GenePA32052
Clinical trialOR1A2
Miscellaneous
canSAR (ICR)OR1A2 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR1A2
EVEXOR1A2
GoPubMedOR1A2
iHOPOR1A2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 12:20:09 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.