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OR1B1 (olfactory receptor, family 1, subfamily B, member 1 (gene/pseudogene))

Identity

Alias_namesolfactory receptor, family 1, subfamily B, member 1 (gene/pseudogene)
Alias_symbol (synonym)OR9-B
Other aliasOR9-26
HGNC (Hugo) OR1B1
LocusID (NCBI) 347169
Atlas_Id 71203
Location 9q33.2  [Link to chromosome band 9q33]
Location_base_pair Starts at 125390858 and ends at 125391814 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OR1B1   8181
Cards
Entrez_Gene (NCBI)OR1B1  347169  olfactory receptor, family 1, subfamily B, member 1 (gene/pseudogene)
AliasesOR9-26; OR9-B
GeneCards (Weizmann)OR1B1
Ensembl hg19 (Hinxton)ENSG00000171484 [Gene_View]  chr9:125390858-125391814 [Contig_View]  OR1B1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000171484 [Gene_View]  chr9:125390858-125391814 [Contig_View]  OR1B1 [Vega]
ICGC DataPortalENSG00000171484
TCGA cBioPortalOR1B1
AceView (NCBI)OR1B1
Genatlas (Paris)OR1B1
WikiGenes347169
SOURCE (Princeton)OR1B1
Genetics Home Reference (NIH)OR1B1
Genomic and cartography
GoldenPath hg19 (UCSC)OR1B1  -     chr9:125390858-125391814 -  9q33.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)OR1B1  -     9q33.2   [Description]    (hg38-Dec_2013)
EnsemblOR1B1 - 9q33.2 [CytoView hg19]  OR1B1 - 9q33.2 [CytoView hg38]
Mapping of homologs : NCBIOR1B1 [Mapview hg19]  OR1B1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001004450
RefSeq genomic (Entrez)NC_000009 NC_018920 NT_008470 NW_004929366
Consensus coding sequences : CCDS (NCBI)OR1B1
Cluster EST : UnigeneHs.553710 [ NCBI ]
CGAP (NCI)Hs.553710
Alternative Splicing GalleryENSG00000171484
Gene ExpressionOR1B1 [ NCBI-GEO ]   OR1B1 [ EBI - ARRAY_EXPRESS ]   OR1B1 [ SEEK ]   OR1B1 [ MEM ]
Gene Expression Viewer (FireBrowse)OR1B1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)347169
GTEX Portal (Tissue expression)OR1B1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NGR6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NGR6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NGR6
Splice isoforms : SwissVarQ8NGR6
PhosPhoSitePlusQ8NGR6
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OR1B1
DMDM Disease mutations347169
Blocks (Seattle)OR1B1
SuperfamilyQ8NGR6
Human Protein AtlasENSG00000171484
Peptide AtlasQ8NGR6
HPRD14913
IPIIPI00169100   
Protein Interaction databases
DIP (DOE-UCLA)Q8NGR6
IntAct (EBI)Q8NGR6
FunCoupENSG00000171484
BioGRIDOR1B1
STRING (EMBL)OR1B1
ZODIACOR1B1
Ontologies - Pathways
QuickGOQ8NGR6
Ontology : AmiGOtransmembrane signaling receptor activity  G-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBItransmembrane signaling receptor activity  G-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception  detection of chemical stimulus involved in sensory perception of smell  
Pathways : KEGGOlfactory transduction   
NDEx NetworkOR1B1
Atlas of Cancer Signalling NetworkOR1B1
Wikipedia pathwaysOR1B1
Orthology - Evolution
OrthoDB347169
GeneTree (enSembl)ENSG00000171484
Phylogenetic Trees/Animal Genes : TreeFamOR1B1
HOVERGENQ8NGR6
HOGENOMQ8NGR6
Homologs : HomoloGeneOR1B1
Homology/Alignments : Family Browser (UCSC)OR1B1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR1B1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR1B1
dbVarOR1B1
ClinVarOR1B1
1000_GenomesOR1B1 
Exome Variant ServerOR1B1
ExAC (Exome Aggregation Consortium)OR1B1 (select the gene name)
Genetic variants : HAPMAP347169
Genomic Variants (DGV)OR1B1 [DGVbeta]
DECIPHER (Syndromes)9:125390858-125391814  ENSG00000171484
CONAN: Copy Number AnalysisOR1B1 
Mutations
ICGC Data PortalOR1B1 
TCGA Data PortalOR1B1 
Broad Tumor PortalOR1B1
OASIS PortalOR1B1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR1B1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOR1B1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR1B1
DgiDB (Drug Gene Interaction Database)OR1B1
DoCM (Curated mutations)OR1B1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR1B1 (select a term)
intoGenOR1B1
Cancer3DOR1B1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenOR1B1
Genetic Testing Registry OR1B1
NextProtQ8NGR6 [Medical]
TSGene347169
GENETestsOR1B1
Huge Navigator OR1B1 [HugePedia]
snp3D : Map Gene to Disease347169
BioCentury BCIQOR1B1
ClinGenOR1B1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD347169
Chemical/Pharm GKB GenePA32055
Clinical trialOR1B1
Miscellaneous
canSAR (ICR)OR1B1 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR1B1
EVEXOR1B1
GoPubMedOR1B1
iHOPOR1B1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:36:09 CET 2017

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