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OR1C1 (olfactory receptor, family 1, subfamily C, member 1)

Identity

Alias_namesolfactory receptor, family 1, subfamily C, member 1
Alias_symbol (synonym)TPCR27
HSTPCR27
Other aliasOR1-42
OR1.5.10
ORL211
HGNC (Hugo) OR1C1
LocusID (NCBI) 26188
Atlas_Id 71204
Location 1q44  [Link to chromosome band 1q44]
Location_base_pair Starts at 247920764 and ends at 247921708 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OR1C1   8182
Cards
Entrez_Gene (NCBI)OR1C1  26188  olfactory receptor, family 1, subfamily C, member 1
AliasesHSTPCR27; OR1-42; OR1.5.10; ORL211; 
TPCR27
GeneCards (Weizmann)OR1C1
Ensembl hg19 (Hinxton)ENSG00000221888 [Gene_View]  chr1:247920764-247921708 [Contig_View]  OR1C1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000221888 [Gene_View]  chr1:247920764-247921708 [Contig_View]  OR1C1 [Vega]
ICGC DataPortalENSG00000221888
TCGA cBioPortalOR1C1
AceView (NCBI)OR1C1
Genatlas (Paris)OR1C1
WikiGenes26188
SOURCE (Princeton)OR1C1
Genetics Home Reference (NIH)OR1C1
Genomic and cartography
GoldenPath hg19 (UCSC)OR1C1  -     chr1:247920764-247921708 -  1q44   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)OR1C1  -     1q44   [Description]    (hg38-Dec_2013)
EnsemblOR1C1 - 1q44 [CytoView hg19]  OR1C1 - 1q44 [CytoView hg38]
Mapping of homologs : NCBIOR1C1 [Mapview hg19]  OR1C1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC140914 X89674
RefSeq transcript (Entrez)NM_012353
RefSeq genomic (Entrez)NC_000001 NC_018912 NT_167186 NW_004929294
Consensus coding sequences : CCDS (NCBI)OR1C1
Cluster EST : UnigeneHs.381306 [ NCBI ]
CGAP (NCI)Hs.381306
Alternative Splicing GalleryENSG00000221888
Gene ExpressionOR1C1 [ NCBI-GEO ]   OR1C1 [ EBI - ARRAY_EXPRESS ]   OR1C1 [ SEEK ]   OR1C1 [ MEM ]
Gene Expression Viewer (FireBrowse)OR1C1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)26188
GTEX Portal (Tissue expression)OR1C1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ15619   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ15619  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ15619
Splice isoforms : SwissVarQ15619
PhosPhoSitePlusQ15619
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OR1C1
DMDM Disease mutations26188
Blocks (Seattle)OR1C1
SuperfamilyQ15619
Human Protein AtlasENSG00000221888
Peptide AtlasQ15619
HPRD14914
IPIIPI00419369   
Protein Interaction databases
DIP (DOE-UCLA)Q15619
IntAct (EBI)Q15619
FunCoupENSG00000221888
BioGRIDOR1C1
STRING (EMBL)OR1C1
ZODIACOR1C1
Ontologies - Pathways
QuickGOQ15619
Ontology : AmiGOG-protein coupled receptor activity  olfactory receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  sensory perception of smell  integral component of membrane  integral component of membrane  detection of chemical stimulus involved in sensory perception  detection of chemical stimulus involved in sensory perception of smell  detection of chemical stimulus involved in sensory perception of smell  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBIG-protein coupled receptor activity  olfactory receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  sensory perception of smell  integral component of membrane  integral component of membrane  detection of chemical stimulus involved in sensory perception  detection of chemical stimulus involved in sensory perception of smell  detection of chemical stimulus involved in sensory perception of smell  detection of chemical stimulus involved in sensory perception of smell  
Pathways : KEGGOlfactory transduction   
NDEx NetworkOR1C1
Atlas of Cancer Signalling NetworkOR1C1
Wikipedia pathwaysOR1C1
Orthology - Evolution
OrthoDB26188
GeneTree (enSembl)ENSG00000221888
Phylogenetic Trees/Animal Genes : TreeFamOR1C1
HOVERGENQ15619
HOGENOMQ15619
Homologs : HomoloGeneOR1C1
Homology/Alignments : Family Browser (UCSC)OR1C1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR1C1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR1C1
dbVarOR1C1
ClinVarOR1C1
1000_GenomesOR1C1 
Exome Variant ServerOR1C1
ExAC (Exome Aggregation Consortium)OR1C1 (select the gene name)
Genetic variants : HAPMAP26188
Genomic Variants (DGV)OR1C1 [DGVbeta]
DECIPHER (Syndromes)1:247920764-247921708  ENSG00000221888
CONAN: Copy Number AnalysisOR1C1 
Mutations
ICGC Data PortalOR1C1 
TCGA Data PortalOR1C1 
Broad Tumor PortalOR1C1
OASIS PortalOR1C1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR1C1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOR1C1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR1C1
DgiDB (Drug Gene Interaction Database)OR1C1
DoCM (Curated mutations)OR1C1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR1C1 (select a term)
intoGenOR1C1
Cancer3DOR1C1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenOR1C1
Genetic Testing Registry OR1C1
NextProtQ15619 [Medical]
TSGene26188
GENETestsOR1C1
Huge Navigator OR1C1 [HugePedia]
snp3D : Map Gene to Disease26188
BioCentury BCIQOR1C1
ClinGenOR1C1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD26188
Chemical/Pharm GKB GenePA32056
Clinical trialOR1C1
Miscellaneous
canSAR (ICR)OR1C1 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR1C1
EVEXOR1C1
GoPubMedOR1C1
iHOPOR1C1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:36:10 CET 2017

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