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OR1D2 (olfactory receptor family 1 subfamily D member 2)

Identity

Alias_namesOLFR1
olfactory receptor
Alias_symbol (synonym)OR17-4
Other alias
HGNC (Hugo) OR1D2
LocusID (NCBI) 4991
Atlas_Id 51306
Location 17p13.3  [Link to chromosome band 17p13]
Location_base_pair Starts at 3092058 and ends at 3092996 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OR1D2   8183
Cards
Entrez_Gene (NCBI)OR1D2  4991  olfactory receptor family 1 subfamily D member 2
AliasesOLFR1; OR17-4
GeneCards (Weizmann)OR1D2
Ensembl hg19 (Hinxton)ENSG00000184166 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000184166 [Gene_View]  chr17:3092058-3092996 [Contig_View]  OR1D2 [Vega]
ICGC DataPortalENSG00000184166
TCGA cBioPortalOR1D2
AceView (NCBI)OR1D2
Genatlas (Paris)OR1D2
WikiGenes4991
SOURCE (Princeton)OR1D2
Genetics Home Reference (NIH)OR1D2
Genomic and cartography
GoldenPath hg38 (UCSC)OR1D2  -     chr17:3092058-3092996 -  17p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OR1D2  -     17p13.3   [Description]    (hg19-Feb_2009)
EnsemblOR1D2 - 17p13.3 [CytoView hg19]  OR1D2 - 17p13.3 [CytoView hg38]
Mapping of homologs : NCBIOR1D2 [Mapview hg19]  OR1D2 [Mapview hg38]
OMIM164342   
Gene and transcription
Genbank (Entrez)BC069552 BC106735 BC106736
RefSeq transcript (Entrez)NM_002548
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OR1D2
Cluster EST : UnigeneHs.532771 [ NCBI ]
CGAP (NCI)Hs.532771
Alternative Splicing GalleryENSG00000184166
Gene ExpressionOR1D2 [ NCBI-GEO ]   OR1D2 [ EBI - ARRAY_EXPRESS ]   OR1D2 [ SEEK ]   OR1D2 [ MEM ]
Gene Expression Viewer (FireBrowse)OR1D2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)<991<+A
GTEX Portal (Tissue expression)OR1D2
Human Protein AtlasENSG00000184166-OR1D2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP34982   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP34982  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP34982
Splice isoforms : SwissVarP34982
PhosPhoSitePlusP34982
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OR1D2
DMDM Disease mutations4991
Blocks (Seattle)OR1D2
SuperfamilyP34982
Human Protein Atlas [tissue]ENSG00000184166-OR1D2 [tissue]
Peptide AtlasP34982
HPRD01255
IPIIPI00003067   
Protein Interaction databases
DIP (DOE-UCLA)P34982
IntAct (EBI)P34982
FunCoupENSG00000184166
BioGRIDOR1D2
STRING (EMBL)OR1D2
ZODIACOR1D2
Ontologies - Pathways
QuickGOP34982
Ontology : AmiGOprotein import into nucleus, translocation  G-protein coupled receptor activity  olfactory receptor activity  intracellular  plasma membrane  integral component of plasma membrane  movement of cell or subcellular component  chemotaxis  G-protein coupled receptor signaling pathway  single fertilization  sensory perception of smell  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBIprotein import into nucleus, translocation  G-protein coupled receptor activity  olfactory receptor activity  intracellular  plasma membrane  integral component of plasma membrane  movement of cell or subcellular component  chemotaxis  G-protein coupled receptor signaling pathway  single fertilization  sensory perception of smell  detection of chemical stimulus involved in sensory perception of smell  
Pathways : KEGGOlfactory transduction   
NDEx NetworkOR1D2
Atlas of Cancer Signalling NetworkOR1D2
Wikipedia pathwaysOR1D2
Orthology - Evolution
OrthoDB4991
GeneTree (enSembl)ENSG00000184166
Phylogenetic Trees/Animal Genes : TreeFamOR1D2
HOVERGENP34982
HOGENOMP34982
Homologs : HomoloGeneOR1D2
Homology/Alignments : Family Browser (UCSC)OR1D2
Gene fusions - Rearrangements
Tumor Fusion PortalOR1D2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR1D2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR1D2
dbVarOR1D2
ClinVarOR1D2
1000_GenomesOR1D2 
Exome Variant ServerOR1D2
ExAC (Exome Aggregation Consortium)ENSG00000184166
GNOMAD BrowserENSG00000184166
Genetic variants : HAPMAP4991
Genomic Variants (DGV)OR1D2 [DGVbeta]
DECIPHEROR1D2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOR1D2 
Mutations
ICGC Data PortalOR1D2 
TCGA Data PortalOR1D2 
Broad Tumor PortalOR1D2
OASIS PortalOR1D2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR1D2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOR1D2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR1D2
DgiDB (Drug Gene Interaction Database)OR1D2
DoCM (Curated mutations)OR1D2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR1D2 (select a term)
intoGenOR1D2
Cancer3DOR1D2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM164342   
Orphanet
DisGeNETOR1D2
MedgenOR1D2
Genetic Testing Registry OR1D2
NextProtP34982 [Medical]
TSGene4991
GENETestsOR1D2
Target ValidationOR1D2
Huge Navigator OR1D2 [HugePedia]
snp3D : Map Gene to Disease4991
BioCentury BCIQOR1D2
ClinGenOR1D2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD4991
Chemical/Pharm GKB GenePA32057
Clinical trialOR1D2
Miscellaneous
canSAR (ICR)OR1D2 (select the gene name)
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR1D2
EVEXOR1D2
GoPubMedOR1D2
iHOPOR1D2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 14:27:17 CET 2017

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