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OR1D4 (olfactory receptor family 1 subfamily D member 4 (gene/pseudogene))

Identity

Alias_namesolfactory receptor, family 1, subfamily D, member 4
olfactory receptor, family 1, subfamily D, member 4 (gene/pseudogene)
Alias_symbol (synonym)OR17-30
Other alias
HGNC (Hugo) OR1D4
LocusID (NCBI) 653166
Atlas_Id 71205
Location 17p13.3  [Link to chromosome band 17p13]
Location_base_pair Starts at 3240676 and ends at 3241614 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OR1D4   8185
Cards
Entrez_Gene (NCBI)OR1D4  653166  olfactory receptor family 1 subfamily D member 4 (gene/pseudogene)
AliasesOR17-30
GeneCards (Weizmann)OR1D4
Ensembl hg19 (Hinxton)ENSG00000255095 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000255095 [Gene_View]  chr17:3240676-3241614 [Contig_View]  OR1D4 [Vega]
ICGC DataPortalENSG00000255095
TCGA cBioPortalOR1D4
AceView (NCBI)OR1D4
Genatlas (Paris)OR1D4
WikiGenes653166
SOURCE (Princeton)OR1D4
Genetics Home Reference (NIH)OR1D4
Genomic and cartography
GoldenPath hg38 (UCSC)OR1D4  -     chr17:3240676-3241614 +  17p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OR1D4  -     17p13.3   [Description]    (hg19-Feb_2009)
EnsemblOR1D4 - 17p13.3 [CytoView hg19]  OR1D4 - 17p13.3 [CytoView hg38]
Mapping of homologs : NCBIOR1D4 [Mapview hg19]  OR1D4 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC118668 BC122528 BC172308
RefSeq transcript (Entrez)NM_003552
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OR1D4
Cluster EST : UnigeneHs.653087 [ NCBI ]
CGAP (NCI)Hs.653087
Alternative Splicing GalleryENSG00000255095
Gene ExpressionOR1D4 [ NCBI-GEO ]   OR1D4 [ EBI - ARRAY_EXPRESS ]   OR1D4 [ SEEK ]   OR1D4 [ MEM ]
Gene Expression Viewer (FireBrowse)OR1D4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)653166
GTEX Portal (Tissue expression)OR1D4
Protein : pattern, domain, 3D structure
UniProt/SwissProtP47884   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP47884  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP47884
Splice isoforms : SwissVarP47884
PhosPhoSitePlusP47884
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OR1D4
DMDM Disease mutations653166
Blocks (Seattle)OR1D4
SuperfamilyP47884
Human Protein AtlasENSG00000255095
Peptide AtlasP47884
IPIIPI00419401   
Protein Interaction databases
DIP (DOE-UCLA)P47884
IntAct (EBI)P47884
FunCoupENSG00000255095
BioGRIDOR1D4
STRING (EMBL)OR1D4
ZODIACOR1D4
Ontologies - Pathways
QuickGOP47884
Ontology : AmiGOG-protein coupled receptor activity  olfactory receptor activity  integral component of plasma membrane  G-protein coupled receptor signaling pathway  sensory perception of chemical stimulus  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBIG-protein coupled receptor activity  olfactory receptor activity  integral component of plasma membrane  G-protein coupled receptor signaling pathway  sensory perception of chemical stimulus  detection of chemical stimulus involved in sensory perception of smell  
NDEx NetworkOR1D4
Atlas of Cancer Signalling NetworkOR1D4
Wikipedia pathwaysOR1D4
Orthology - Evolution
OrthoDB653166
GeneTree (enSembl)ENSG00000255095
Phylogenetic Trees/Animal Genes : TreeFamOR1D4
HOVERGENP47884
HOGENOMP47884
Homologs : HomoloGeneOR1D4
Homology/Alignments : Family Browser (UCSC)OR1D4
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR1D4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR1D4
dbVarOR1D4
ClinVarOR1D4
1000_GenomesOR1D4 
Exome Variant ServerOR1D4
ExAC (Exome Aggregation Consortium)OR1D4 (select the gene name)
Genetic variants : HAPMAP653166
Genomic Variants (DGV)OR1D4 [DGVbeta]
DECIPHEROR1D4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOR1D4 
Mutations
ICGC Data PortalOR1D4 
TCGA Data PortalOR1D4 
Broad Tumor PortalOR1D4
OASIS PortalOR1D4 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDOR1D4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR1D4
DgiDB (Drug Gene Interaction Database)OR1D4
DoCM (Curated mutations)OR1D4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR1D4 (select a term)
intoGenOR1D4
Cancer3DOR1D4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenOR1D4
Genetic Testing Registry OR1D4
NextProtP47884 [Medical]
TSGene653166
GENETestsOR1D4
Target ValidationOR1D4
Huge Navigator OR1D4 [HugePedia]
snp3D : Map Gene to Disease653166
BioCentury BCIQOR1D4
ClinGenOR1D4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD653166
Chemical/Pharm GKB GenePA32059
Clinical trialOR1D4
Miscellaneous
canSAR (ICR)OR1D4 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR1D4
EVEXOR1D4
GoPubMedOR1D4
iHOPOR1D4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:32:51 CEST 2017

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