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OR1D5 (olfactory receptor family 1 subfamily D member 5)

Identity

Alias_namesolfactory receptor, family 1, subfamily D, member 5
Alias_symbol (synonym)OR17-31
Other aliasC17orf2
OR17-2
OR17-30
OR1D4
HGNC (Hugo) OR1D5
LocusID (NCBI) 8386
Atlas_Id 71206
Location 17p13.3  [Link to chromosome band 17p13]
Location_base_pair Starts at 3062669 and ends at 3063607 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OR1D5   8186
Cards
Entrez_Gene (NCBI)OR1D5  8386  olfactory receptor family 1 subfamily D member 5
AliasesC17orf2; OR17-2; OR17-30; OR17-31; 
OR1D4
GeneCards (Weizmann)OR1D5
Ensembl hg19 (Hinxton)ENSG00000262628 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000262628 [Gene_View]  chr17:3062669-3063607 [Contig_View]  OR1D5 [Vega]
ICGC DataPortalENSG00000262628
TCGA cBioPortalOR1D5
AceView (NCBI)OR1D5
Genatlas (Paris)OR1D5
WikiGenes8386
SOURCE (Princeton)OR1D5
Genetics Home Reference (NIH)OR1D5
Genomic and cartography
GoldenPath hg38 (UCSC)OR1D5  -     chr17:3062669-3063607 -  17p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OR1D5  -     17p13.3   [Description]    (hg19-Feb_2009)
EnsemblOR1D5 - 17p13.3 [CytoView hg19]  OR1D5 - 17p13.3 [CytoView hg38]
Mapping of homologs : NCBIOR1D5 [Mapview hg19]  OR1D5 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC106876 BC152939
RefSeq transcript (Entrez)NM_014566
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OR1D5
Cluster EST : UnigeneHs.553508 [ NCBI ]
CGAP (NCI)Hs.553508
Alternative Splicing GalleryENSG00000262628
Gene ExpressionOR1D5 [ NCBI-GEO ]   OR1D5 [ EBI - ARRAY_EXPRESS ]   OR1D5 [ SEEK ]   OR1D5 [ MEM ]
Gene Expression Viewer (FireBrowse)OR1D5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)8386
GTEX Portal (Tissue expression)OR1D5
Protein : pattern, domain, 3D structure
UniProt/SwissProtP58170   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP58170  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP58170
Splice isoforms : SwissVarP58170
PhosPhoSitePlusP58170
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OR1D5
DMDM Disease mutations8386
Blocks (Seattle)OR1D5
SuperfamilyP58170
Human Protein AtlasENSG00000262628
Peptide AtlasP58170
HPRD17684
Protein Interaction databases
DIP (DOE-UCLA)P58170
IntAct (EBI)P58170
FunCoupENSG00000262628
BioGRIDOR1D5
STRING (EMBL)OR1D5
ZODIACOR1D5
Ontologies - Pathways
QuickGOP58170
Ontology : AmiGOG-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  sensory perception of smell  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBIG-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  sensory perception of smell  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Pathways : KEGGOlfactory transduction   
NDEx NetworkOR1D5
Atlas of Cancer Signalling NetworkOR1D5
Wikipedia pathwaysOR1D5
Orthology - Evolution
OrthoDB8386
GeneTree (enSembl)ENSG00000262628
Phylogenetic Trees/Animal Genes : TreeFamOR1D5
HOVERGENP58170
HOGENOMP58170
Homologs : HomoloGeneOR1D5
Homology/Alignments : Family Browser (UCSC)OR1D5
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR1D5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR1D5
dbVarOR1D5
ClinVarOR1D5
1000_GenomesOR1D5 
Exome Variant ServerOR1D5
ExAC (Exome Aggregation Consortium)OR1D5 (select the gene name)
Genetic variants : HAPMAP8386
Genomic Variants (DGV)OR1D5 [DGVbeta]
DECIPHEROR1D5 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOR1D5 
Mutations
ICGC Data PortalOR1D5 
TCGA Data PortalOR1D5 
Broad Tumor PortalOR1D5
OASIS PortalOR1D5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR1D5  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOR1D5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR1D5
DgiDB (Drug Gene Interaction Database)OR1D5
DoCM (Curated mutations)OR1D5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR1D5 (select a term)
intoGenOR1D5
Cancer3DOR1D5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenOR1D5
Genetic Testing Registry OR1D5
NextProtP58170 [Medical]
TSGene8386
GENETestsOR1D5
Target ValidationOR1D5
Huge Navigator OR1D5 [HugePedia]
snp3D : Map Gene to Disease8386
BioCentury BCIQOR1D5
ClinGenOR1D5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD8386
Chemical/Pharm GKB GenePA32060
Clinical trialOR1D5
Miscellaneous
canSAR (ICR)OR1D5 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR1D5
EVEXOR1D5
GoPubMedOR1D5
iHOPOR1D5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:33:54 CEST 2017

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