Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

OR1E2 (olfactory receptor family 1 subfamily E member 2)

Identity

Alias_namesOR1E4
olfactory receptor, family 1, subfamily E, member 2
Alias_symbol (synonym)OR17-93
OR17-135
Other aliasOR17-136
OR1E7
OST529
HGNC (Hugo) OR1E2
LocusID (NCBI) 8388
Atlas_Id 71208
Location 17p13.2  [Link to chromosome band 17p13]
Location_base_pair Starts at 3432870 and ends at 3433841 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OR1E2   8190
Cards
Entrez_Gene (NCBI)OR1E2  8388  olfactory receptor family 1 subfamily E member 2
AliasesOR17-135; OR17-136; OR17-93; OR1E4; 
OR1E7; OST529
GeneCards (Weizmann)OR1E2
Ensembl hg19 (Hinxton)ENSG00000127780 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000127780 [Gene_View]  chr17:3432870-3433841 [Contig_View]  OR1E2 [Vega]
ICGC DataPortalENSG00000127780
TCGA cBioPortalOR1E2
AceView (NCBI)OR1E2
Genatlas (Paris)OR1E2
WikiGenes8388
SOURCE (Princeton)OR1E2
Genetics Home Reference (NIH)OR1E2
Genomic and cartography
GoldenPath hg38 (UCSC)OR1E2  -     chr17:3432870-3433841 -  17p13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OR1E2  -     17p13.2   [Description]    (hg19-Feb_2009)
EnsemblOR1E2 - 17p13.2 [CytoView hg19]  OR1E2 - 17p13.2 [CytoView hg38]
Mapping of homologs : NCBIOR1E2 [Mapview hg19]  OR1E2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC121105 BC121106
RefSeq transcript (Entrez)NM_003554
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OR1E2
Cluster EST : UnigeneHs.533931 [ NCBI ]
CGAP (NCI)Hs.533931
Alternative Splicing GalleryENSG00000127780
Gene ExpressionOR1E2 [ NCBI-GEO ]   OR1E2 [ EBI - ARRAY_EXPRESS ]   OR1E2 [ SEEK ]   OR1E2 [ MEM ]
Gene Expression Viewer (FireBrowse)OR1E2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)8388
GTEX Portal (Tissue expression)OR1E2
Protein : pattern, domain, 3D structure
UniProt/SwissProtP47887   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP47887  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP47887
Splice isoforms : SwissVarP47887
PhosPhoSitePlusP47887
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OR1E2
DMDM Disease mutations8388
Blocks (Seattle)OR1E2
SuperfamilyP47887
Human Protein AtlasENSG00000127780
Peptide AtlasP47887
HPRD17686
IPIIPI00939938   IPI00026655   
Protein Interaction databases
DIP (DOE-UCLA)P47887
IntAct (EBI)P47887
FunCoupENSG00000127780
BioGRIDOR1E2
STRING (EMBL)OR1E2
ZODIACOR1E2
Ontologies - Pathways
QuickGOP47887
Ontology : AmiGOreceptor activity  transmembrane signaling receptor activity  G-protein coupled receptor activity  olfactory receptor activity  plasma membrane  integral component of plasma membrane  signal transduction  G-protein coupled receptor signaling pathway  sensory perception of chemical stimulus  detection of chemical stimulus involved in sensory perception  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBIreceptor activity  transmembrane signaling receptor activity  G-protein coupled receptor activity  olfactory receptor activity  plasma membrane  integral component of plasma membrane  signal transduction  G-protein coupled receptor signaling pathway  sensory perception of chemical stimulus  detection of chemical stimulus involved in sensory perception  detection of chemical stimulus involved in sensory perception of smell  
Pathways : KEGGOlfactory transduction   
NDEx NetworkOR1E2
Atlas of Cancer Signalling NetworkOR1E2
Wikipedia pathwaysOR1E2
Orthology - Evolution
OrthoDB8388
GeneTree (enSembl)ENSG00000127780
Phylogenetic Trees/Animal Genes : TreeFamOR1E2
HOVERGENP47887
HOGENOMP47887
Homologs : HomoloGeneOR1E2
Homology/Alignments : Family Browser (UCSC)OR1E2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR1E2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR1E2
dbVarOR1E2
ClinVarOR1E2
1000_GenomesOR1E2 
Exome Variant ServerOR1E2
ExAC (Exome Aggregation Consortium)OR1E2 (select the gene name)
Genetic variants : HAPMAP8388
Genomic Variants (DGV)OR1E2 [DGVbeta]
DECIPHEROR1E2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOR1E2 
Mutations
ICGC Data PortalOR1E2 
TCGA Data PortalOR1E2 
Broad Tumor PortalOR1E2
OASIS PortalOR1E2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR1E2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOR1E2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR1E2
DgiDB (Drug Gene Interaction Database)OR1E2
DoCM (Curated mutations)OR1E2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR1E2 (select a term)
intoGenOR1E2
Cancer3DOR1E2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenOR1E2
Genetic Testing Registry OR1E2
NextProtP47887 [Medical]
TSGene8388
GENETestsOR1E2
Target ValidationOR1E2
Huge Navigator OR1E2 [HugePedia]
snp3D : Map Gene to Disease8388
BioCentury BCIQOR1E2
ClinGenOR1E2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD8388
Chemical/Pharm GKB GenePA32063
Clinical trialOR1E2
Miscellaneous
canSAR (ICR)OR1E2 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR1E2
EVEXOR1E2
GoPubMedOR1E2
iHOPOR1E2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 13:32:51 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.