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OR1F1 (olfactory receptor, family 1, subfamily F, member 1)

Identity

Alias_namesOR1F4
OR1F6
OR1F7
OR1F8
OR1F9
OR1F5
OR1F10
OR1F13P
olfactory receptor, family 1, subfamily F, member 1
Alias_symbol (synonym)Olfmf
OR16-36
OR16-37
OR16-88
OR16-89
OR16-90
OLFMF
OR3-145
Other aliasORL1023
HGNC (Hugo) OR1F1
LocusID (NCBI) 4992
Atlas_Id 71209
Location 16p13.3  [Link to chromosome band 16p13]
Location_base_pair Starts at 3254247 and ends at 3255185 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OR1F1   8194
Cards
Entrez_Gene (NCBI)OR1F1  4992  olfactory receptor, family 1, subfamily F, member 1
AliasesOLFMF; OR16-36; OR16-37; OR16-88; 
OR16-89; OR16-90; OR1F10; OR1F13P; OR1F4; OR1F5; OR1F6; OR1F7; OR1F8; OR1F9; OR3-145; ORL1023
GeneCards (Weizmann)OR1F1
Ensembl hg19 (Hinxton)ENSG00000168124 [Gene_View]  chr16:3254247-3255185 [Contig_View]  OR1F1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000168124 [Gene_View]  chr16:3254247-3255185 [Contig_View]  OR1F1 [Vega]
ICGC DataPortalENSG00000168124
TCGA cBioPortalOR1F1
AceView (NCBI)OR1F1
Genatlas (Paris)OR1F1
WikiGenes4992
SOURCE (Princeton)OR1F1
Genetics Home Reference (NIH)OR1F1
Genomic and cartography
GoldenPath hg19 (UCSC)OR1F1  -     chr16:3254247-3255185 +  16p13.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)OR1F1  -     16p13.3   [Description]    (hg38-Dec_2013)
EnsemblOR1F1 - 16p13.3 [CytoView hg19]  OR1F1 - 16p13.3 [CytoView hg38]
Mapping of homologs : NCBIOR1F1 [Mapview hg19]  OR1F1 [Mapview hg38]
OMIM603232   
Gene and transcription
Genbank (Entrez)BC069335 HG507674 Y14442
RefSeq transcript (Entrez)NM_012360
RefSeq genomic (Entrez)NC_000016 NC_018927 NT_010393 NW_004929400
Consensus coding sequences : CCDS (NCBI)OR1F1
Cluster EST : UnigeneHs.664502 [ NCBI ]
CGAP (NCI)Hs.664502
Alternative Splicing GalleryENSG00000168124
Gene ExpressionOR1F1 [ NCBI-GEO ]   OR1F1 [ EBI - ARRAY_EXPRESS ]   OR1F1 [ SEEK ]   OR1F1 [ MEM ]
Gene Expression Viewer (FireBrowse)OR1F1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)4992
GTEX Portal (Tissue expression)OR1F1
Protein : pattern, domain, 3D structure
UniProt/SwissProtO43749   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO43749  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO43749
Splice isoforms : SwissVarO43749
PhosPhoSitePlusO43749
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OR1F1
DMDM Disease mutations4992
Blocks (Seattle)OR1F1
SuperfamilyO43749
Human Protein AtlasENSG00000168124
Peptide AtlasO43749
HPRD09125
IPIIPI00013916   
Protein Interaction databases
DIP (DOE-UCLA)O43749
IntAct (EBI)O43749
FunCoupENSG00000168124
BioGRIDOR1F1
STRING (EMBL)OR1F1
ZODIACOR1F1
Ontologies - Pathways
QuickGOO43749
Ontology : AmiGOG-protein coupled receptor activity  olfactory receptor activity  plasma membrane  signal transduction  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception  detection of chemical stimulus involved in sensory perception of smell  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBIG-protein coupled receptor activity  olfactory receptor activity  plasma membrane  signal transduction  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception  detection of chemical stimulus involved in sensory perception of smell  detection of chemical stimulus involved in sensory perception of smell  
Pathways : KEGGOlfactory transduction   
NDEx NetworkOR1F1
Atlas of Cancer Signalling NetworkOR1F1
Wikipedia pathwaysOR1F1
Orthology - Evolution
OrthoDB4992
GeneTree (enSembl)ENSG00000168124
Phylogenetic Trees/Animal Genes : TreeFamOR1F1
HOVERGENO43749
HOGENOMO43749
Homologs : HomoloGeneOR1F1
Homology/Alignments : Family Browser (UCSC)OR1F1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR1F1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR1F1
dbVarOR1F1
ClinVarOR1F1
1000_GenomesOR1F1 
Exome Variant ServerOR1F1
ExAC (Exome Aggregation Consortium)OR1F1 (select the gene name)
Genetic variants : HAPMAP4992
Genomic Variants (DGV)OR1F1 [DGVbeta]
DECIPHER (Syndromes)16:3254247-3255185  ENSG00000168124
CONAN: Copy Number AnalysisOR1F1 
Mutations
ICGC Data PortalOR1F1 
TCGA Data PortalOR1F1 
Broad Tumor PortalOR1F1
OASIS PortalOR1F1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR1F1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOR1F1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR1F1
DgiDB (Drug Gene Interaction Database)OR1F1
DoCM (Curated mutations)OR1F1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR1F1 (select a term)
intoGenOR1F1
Cancer3DOR1F1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM603232   
Orphanet
MedgenOR1F1
Genetic Testing Registry OR1F1
NextProtO43749 [Medical]
TSGene4992
GENETestsOR1F1
Huge Navigator OR1F1 [HugePedia]
snp3D : Map Gene to Disease4992
BioCentury BCIQOR1F1
ClinGenOR1F1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD4992
Chemical/Pharm GKB GenePA32070
Clinical trialOR1F1
Miscellaneous
canSAR (ICR)OR1F1 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR1F1
EVEXOR1F1
GoPubMedOR1F1
iHOPOR1F1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:36:11 CET 2017

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