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OR1F12 (olfactory receptor family 1 subfamily F member 12)

Identity

Alias (NCBI)OR1F12P
OR1F12Q
OR6-12
hs6M1-35P
HGNC (Hugo) OR1F12
LocusID (NCBI) 442179
Atlas_Id 80386
Location 6p22.1  [Link to chromosome band 6p22]
Location_base_pair Starts at 28073316 and ends at 28074329 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)OR1F12   13964
Cards
Entrez_Gene (NCBI)OR1F12  442179  olfactory receptor family 1 subfamily F member 12
AliasesOR1F12P; OR1F12Q; OR6-12; hs6M1-35P
GeneCards (Weizmann)OR1F12
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]   [Sequence]  chr6:28073316-28074329 [Contig_View]  OR1F12 [Vega]
TCGA cBioPortalOR1F12
AceView (NCBI)OR1F12
Genatlas (Paris)OR1F12
WikiGenes442179
SOURCE (Princeton)OR1F12
Genetics Home Reference (NIH)OR1F12
Genomic and cartography
GoldenPath hg38 (UCSC)OR1F12  -     chr6:28073316-28074329 +  6p22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OR1F12  -     6p22.1   [Description]    (hg19-Feb_2009)
GoldenPathOR1F12 - 6p22.1 [CytoView hg19]  OR1F12 - 6p22.1 [CytoView hg38]
genome Data Viewer NCBIOR1F12 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001355425
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OR1F12
Gene ExpressionOR1F12 [ NCBI-GEO ]   OR1F12 [ EBI - ARRAY_EXPRESS ]   OR1F12 [ SEEK ]   OR1F12 [ MEM ]
Gene Expression Viewer (FireBrowse)OR1F12 [ Firebrowse - Broad ]
GenevisibleExpression of OR1F12 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)442179
GTEX Portal (Tissue expression)OR1F12
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NHA8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NHA8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NHA8
Splice isoforms : SwissVarQ8NHA8
PhosPhoSitePlusQ8NHA8
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)7tm_4 (PF13853)   
Domain families : Pfam (NCBI)pfam13853   
Conserved Domain (NCBI)OR1F12
DMDM Disease mutations442179
Blocks (Seattle)OR1F12
SuperfamilyQ8NHA8
Peptide AtlasQ8NHA8
IPIIPI00303859   
Protein Interaction databases
DIP (DOE-UCLA)Q8NHA8
IntAct (EBI)Q8NHA8
BioGRIDOR1F12
STRING (EMBL)OR1F12
ZODIACOR1F12
Ontologies - Pathways
QuickGOQ8NHA8
Ontology : AmiGOG protein-coupled receptor activity  olfactory receptor activity  plasma membrane  G protein-coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBIG protein-coupled receptor activity  olfactory receptor activity  plasma membrane  G protein-coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
NDEx NetworkOR1F12
Atlas of Cancer Signalling NetworkOR1F12
Wikipedia pathwaysOR1F12
Orthology - Evolution
OrthoDB442179
Phylogenetic Trees/Animal Genes : TreeFamOR1F12
HOGENOMQ8NHA8
Homologs : HomoloGeneOR1F12
Homology/Alignments : Family Browser (UCSC)OR1F12
Gene fusions - Rearrangements
Fusion : QuiverOR1F12
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR1F12 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR1F12
dbVarOR1F12
ClinVarOR1F12
1000_GenomesOR1F12 
Exome Variant ServerOR1F12
Varsome BrowserOR1F12
Genetic variants : HAPMAP442179
Genomic Variants (DGV)OR1F12 [DGVbeta]
DECIPHEROR1F12 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOR1F12 
Mutations
ICGC Data PortalOR1F12 
TCGA Data PortalOR1F12 
Broad Tumor PortalOR1F12
OASIS PortalOR1F12 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDOR1F12
BioMutasearch OR1F12
DgiDB (Drug Gene Interaction Database)OR1F12
DoCM (Curated mutations)OR1F12 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR1F12 (select a term)
intoGenOR1F12
Cancer3DOR1F12(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETOR1F12
MedgenOR1F12
Genetic Testing Registry OR1F12
NextProtQ8NHA8 [Medical]
TSGene442179
GENETestsOR1F12
Target ValidationOR1F12
Huge Navigator OR1F12 [HugePedia]
snp3D : Map Gene to Disease442179
BioCentury BCIQOR1F12
ClinGenOR1F12
Clinical trials, drugs, therapy
Protein Interactions : CTD442179
Pharm GKB GenePA32073
Clinical trialOR1F12
Miscellaneous
canSAR (ICR)OR1F12 (select the gene name)
HarmonizomeOR1F12
DataMed IndexOR1F12
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR1F12
EVEXOR1F12
GoPubMedOR1F12
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sat Aug 22 19:29:39 CEST 2020

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