Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

OR1F2P (olfactory receptor family 1 subfamily F member 2 pseudogene)

Identity

Other aliasOLFMF2
OR16-3
OR1F11
OR1F2
OR1F3P
hg91
HGNC (Hugo) OR1F2P
LocusID (NCBI) 26184
Atlas_Id 71210
Location 16p13.3  [Link to chromosome band 16p13]
Location_base_pair Starts at 3215562 and ends at 3216546 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OR1F2P   8196
Cards
Entrez_Gene (NCBI)OR1F2P  26184  olfactory receptor family 1 subfamily F member 2 pseudogene
AliasesOLFMF2; OR16-3; OR1F11; OR1F2; 
OR1F3P; hg91
GeneCards (Weizmann)OR1F2P
Ensembl hg19 (Hinxton)ENSG00000203581 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000203581 [Gene_View]  chr16:3215562-3216546 [Contig_View]  OR1F2P [Vega]
ICGC DataPortalENSG00000203581
TCGA cBioPortalOR1F2P
AceView (NCBI)OR1F2P
Genatlas (Paris)OR1F2P
WikiGenes26184
SOURCE (Princeton)OR1F2P
Genetics Home Reference (NIH)OR1F2P
Genomic and cartography
GoldenPath hg38 (UCSC)OR1F2P  -     chr16:3215562-3216546 +  16p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OR1F2P  -     16p13.3   [Description]    (hg19-Feb_2009)
EnsemblOR1F2P - 16p13.3 [CytoView hg19]  OR1F2P - 16p13.3 [CytoView hg38]
Mapping of homologs : NCBIOR1F2P [Mapview hg19]  OR1F2P [Mapview hg38]
Gene and transcription
Genbank (Entrez)AJ003145 X64987
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OR1F2P
Cluster EST : UnigeneHs.651203 [ NCBI ]
CGAP (NCI)Hs.651203
Alternative Splicing GalleryENSG00000203581
Gene ExpressionOR1F2P [ NCBI-GEO ]   OR1F2P [ EBI - ARRAY_EXPRESS ]   OR1F2P [ SEEK ]   OR1F2P [ MEM ]
Gene Expression Viewer (FireBrowse)OR1F2P [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)26184
GTEX Portal (Tissue expression)OR1F2P
Human Protein AtlasENSG00000203581-OR1F2P [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96R84   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96R84  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96R84
Splice isoforms : SwissVarQ96R84
PhosPhoSitePlusQ96R84
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OR1F2P
DMDM Disease mutations26184
Blocks (Seattle)OR1F2P
SuperfamilyQ96R84
Human Protein Atlas [tissue]ENSG00000203581-OR1F2P [tissue]
Peptide AtlasQ96R84
IPIIPI00073066   
Protein Interaction databases
DIP (DOE-UCLA)Q96R84
IntAct (EBI)Q96R84
FunCoupENSG00000203581
BioGRIDOR1F2P
STRING (EMBL)OR1F2P
ZODIACOR1F2P
Ontologies - Pathways
QuickGOQ96R84
Ontology : AmiGOG-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBIG-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
NDEx NetworkOR1F2P
Atlas of Cancer Signalling NetworkOR1F2P
Wikipedia pathwaysOR1F2P
Orthology - Evolution
OrthoDB26184
GeneTree (enSembl)ENSG00000203581
Phylogenetic Trees/Animal Genes : TreeFamOR1F2P
HOVERGENQ96R84
HOGENOMQ96R84
Homologs : HomoloGeneOR1F2P
Homology/Alignments : Family Browser (UCSC)OR1F2P
Gene fusions - Rearrangements
Fusion: Tumor Portal OR1F2P
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR1F2P [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR1F2P
dbVarOR1F2P
ClinVarOR1F2P
1000_GenomesOR1F2P 
Exome Variant ServerOR1F2P
ExAC (Exome Aggregation Consortium)ENSG00000203581
GNOMAD BrowserENSG00000203581
Genetic variants : HAPMAP26184
Genomic Variants (DGV)OR1F2P [DGVbeta]
DECIPHEROR1F2P [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOR1F2P 
Mutations
ICGC Data PortalOR1F2P 
TCGA Data PortalOR1F2P 
Broad Tumor PortalOR1F2P
OASIS PortalOR1F2P [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDOR1F2P
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR1F2P
DgiDB (Drug Gene Interaction Database)OR1F2P
DoCM (Curated mutations)OR1F2P (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR1F2P (select a term)
intoGenOR1F2P
Cancer3DOR1F2P(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenOR1F2P
Genetic Testing Registry OR1F2P
NextProtQ96R84 [Medical]
TSGene26184
GENETestsOR1F2P
Target ValidationOR1F2P
Huge Navigator OR1F2P [HugePedia]
snp3D : Map Gene to Disease26184
BioCentury BCIQOR1F2P
ClinGenOR1F2P
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD26184
Chemical/Pharm GKB GenePA32075
Clinical trialOR1F2P
Miscellaneous
canSAR (ICR)OR1F2P (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR1F2P
EVEXOR1F2P
GoPubMedOR1F2P
iHOPOR1F2P
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 12:20:11 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.