Atlas of Genetics and Cytogenetics in Oncology and Haematology

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OR1J1 (olfactory receptor family 1 subfamily J member 1)

Identity

Alias_namesolfactory receptor, family 1, subfamily J, member 1
Alias_symbol (synonym)hg32
Other aliasOR9-18
HGNC (Hugo) OR1J1
LocusID (NCBI) 347168
Atlas_Id 71213
Location 9q33.2  [Link to chromosome band 9q33]
Location_base_pair Starts at 122476958 and ends at 122477926 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)OR1J1   8208
Cards
Entrez_Gene (NCBI)OR1J1  347168  olfactory receptor family 1 subfamily J member 1
AliasesOR9-18; hg32
GeneCards (Weizmann)OR1J1
Ensembl hg19 (Hinxton)ENSG00000136834 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000136834 [Gene_View]  chr9:122476958-122477926 [Contig_View]  OR1J1 [Vega]
ICGC DataPortalENSG00000136834
TCGA cBioPortalOR1J1
AceView (NCBI)OR1J1
Genatlas (Paris)OR1J1
WikiGenes347168
SOURCE (Princeton)OR1J1
Genetics Home Reference (NIH)OR1J1
Genomic and cartography
GoldenPath hg38 (UCSC)OR1J1  -     chr9:122476958-122477926 -  9q33.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OR1J1  -     9q33.2   [Description]    (hg19-Feb_2009)
EnsemblOR1J1 - 9q33.2 [CytoView hg19]  OR1J1 - 9q33.2 [CytoView hg38]
Mapping of homologs : NCBIOR1J1 [Mapview hg19]  OR1J1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC136933 BC136938
RefSeq transcript (Entrez)NM_001004451
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OR1J1
Cluster EST : UnigeneHs.632692 [ NCBI ]
CGAP (NCI)Hs.632692
Alternative Splicing GalleryENSG00000136834
Gene ExpressionOR1J1 [ NCBI-GEO ]   OR1J1 [ EBI - ARRAY_EXPRESS ]   OR1J1 [ SEEK ]   OR1J1 [ MEM ]
Gene Expression Viewer (FireBrowse)OR1J1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)347168
GTEX Portal (Tissue expression)OR1J1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NGS3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NGS3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NGS3
Splice isoforms : SwissVarQ8NGS3
PhosPhoSitePlusQ8NGS3
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OR1J1
DMDM Disease mutations347168
Blocks (Seattle)OR1J1
SuperfamilyQ8NGS3
Human Protein AtlasENSG00000136834
Peptide AtlasQ8NGS3
HPRD14916
IPIIPI00303629   
Protein Interaction databases
DIP (DOE-UCLA)Q8NGS3
IntAct (EBI)Q8NGS3
FunCoupENSG00000136834
BioGRIDOR1J1
STRING (EMBL)OR1J1
ZODIACOR1J1
Ontologies - Pathways
QuickGOQ8NGS3
Ontology : AmiGOG-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBIG-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Pathways : KEGGOlfactory transduction   
NDEx NetworkOR1J1
Atlas of Cancer Signalling NetworkOR1J1
Wikipedia pathwaysOR1J1
Orthology - Evolution
OrthoDB347168
GeneTree (enSembl)ENSG00000136834
Phylogenetic Trees/Animal Genes : TreeFamOR1J1
HOVERGENQ8NGS3
HOGENOMQ8NGS3
Homologs : HomoloGeneOR1J1
Homology/Alignments : Family Browser (UCSC)OR1J1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR1J1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR1J1
dbVarOR1J1
ClinVarOR1J1
1000_GenomesOR1J1 
Exome Variant ServerOR1J1
ExAC (Exome Aggregation Consortium)OR1J1 (select the gene name)
Genetic variants : HAPMAP347168
Genomic Variants (DGV)OR1J1 [DGVbeta]
DECIPHEROR1J1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOR1J1 
Mutations
ICGC Data PortalOR1J1 
TCGA Data PortalOR1J1 
Broad Tumor PortalOR1J1
OASIS PortalOR1J1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR1J1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOR1J1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR1J1
DgiDB (Drug Gene Interaction Database)OR1J1
DoCM (Curated mutations)OR1J1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR1J1 (select a term)
intoGenOR1J1
Cancer3DOR1J1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenOR1J1
Genetic Testing Registry OR1J1
NextProtQ8NGS3 [Medical]
TSGene347168
GENETestsOR1J1
Target ValidationOR1J1
Huge Navigator OR1J1 [HugePedia]
snp3D : Map Gene to Disease347168
BioCentury BCIQOR1J1
ClinGenOR1J1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD347168
Chemical/Pharm GKB GenePA32079
Clinical trialOR1J1
Miscellaneous
canSAR (ICR)OR1J1 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR1J1
EVEXOR1J1
GoPubMedOR1J1
iHOPOR1J1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:33:56 CEST 2017
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