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OR1J2 (olfactory receptor family 1 subfamily J member 2)

Identity

Alias_namesOR1J3
OR1J5
olfactory receptor, family 1, subfamily J, member 2
Alias_symbol (synonym)OST044
Other aliasHG152
HSA5
OR9-19
HGNC (Hugo) OR1J2
LocusID (NCBI) 26740
Atlas_Id 71214
Location 9q33.2  [Link to chromosome band 9q33]
Location_base_pair Starts at 122510802 and ends at 122511743 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OR1J2   8209
Cards
Entrez_Gene (NCBI)OR1J2  26740  olfactory receptor family 1 subfamily J member 2
AliasesHG152; HSA5; OR1J3; OR1J5; 
OR9-19; OST044
GeneCards (Weizmann)OR1J2
Ensembl hg19 (Hinxton)ENSG00000197233 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000197233 [Gene_View]  chr9:122510802-122511743 [Contig_View]  OR1J2 [Vega]
ICGC DataPortalENSG00000197233
TCGA cBioPortalOR1J2
AceView (NCBI)OR1J2
Genatlas (Paris)OR1J2
WikiGenes26740
SOURCE (Princeton)OR1J2
Genetics Home Reference (NIH)OR1J2
Genomic and cartography
GoldenPath hg38 (UCSC)OR1J2  -     chr9:122510802-122511743 +  9q33.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OR1J2  -     9q33.2   [Description]    (hg19-Feb_2009)
EnsemblOR1J2 - 9q33.2 [CytoView hg19]  OR1J2 - 9q33.2 [CytoView hg38]
Mapping of homologs : NCBIOR1J2 [Mapview hg19]  OR1J2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK123016 BC140248 BC146522 X64989
RefSeq transcript (Entrez)NM_054107
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OR1J2
Cluster EST : UnigeneHs.745497 [ NCBI ]
CGAP (NCI)Hs.745497
Alternative Splicing GalleryENSG00000197233
Gene ExpressionOR1J2 [ NCBI-GEO ]   OR1J2 [ EBI - ARRAY_EXPRESS ]   OR1J2 [ SEEK ]   OR1J2 [ MEM ]
Gene Expression Viewer (FireBrowse)OR1J2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)26740
GTEX Portal (Tissue expression)OR1J2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NGS2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NGS2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NGS2
Splice isoforms : SwissVarQ8NGS2
PhosPhoSitePlusQ8NGS2
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OR1J2
DMDM Disease mutations26740
Blocks (Seattle)OR1J2
SuperfamilyQ8NGS2
Human Protein AtlasENSG00000197233
Peptide AtlasQ8NGS2
HPRD14917
IPIIPI00169107   IPI00983428   IPI00872325   
Protein Interaction databases
DIP (DOE-UCLA)Q8NGS2
IntAct (EBI)Q8NGS2
FunCoupENSG00000197233
BioGRIDOR1J2
STRING (EMBL)OR1J2
ZODIACOR1J2
Ontologies - Pathways
QuickGOQ8NGS2
Ontology : AmiGOG-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBIG-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Pathways : KEGGOlfactory transduction   
NDEx NetworkOR1J2
Atlas of Cancer Signalling NetworkOR1J2
Wikipedia pathwaysOR1J2
Orthology - Evolution
OrthoDB26740
GeneTree (enSembl)ENSG00000197233
Phylogenetic Trees/Animal Genes : TreeFamOR1J2
HOVERGENQ8NGS2
HOGENOMQ8NGS2
Homologs : HomoloGeneOR1J2
Homology/Alignments : Family Browser (UCSC)OR1J2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR1J2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR1J2
dbVarOR1J2
ClinVarOR1J2
1000_GenomesOR1J2 
Exome Variant ServerOR1J2
ExAC (Exome Aggregation Consortium)OR1J2 (select the gene name)
Genetic variants : HAPMAP26740
Genomic Variants (DGV)OR1J2 [DGVbeta]
DECIPHEROR1J2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOR1J2 
Mutations
ICGC Data PortalOR1J2 
TCGA Data PortalOR1J2 
Broad Tumor PortalOR1J2
OASIS PortalOR1J2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR1J2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOR1J2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR1J2
DgiDB (Drug Gene Interaction Database)OR1J2
DoCM (Curated mutations)OR1J2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR1J2 (select a term)
intoGenOR1J2
Cancer3DOR1J2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenOR1J2
Genetic Testing Registry OR1J2
NextProtQ8NGS2 [Medical]
TSGene26740
GENETestsOR1J2
Target ValidationOR1J2
Huge Navigator OR1J2 [HugePedia]
snp3D : Map Gene to Disease26740
BioCentury BCIQOR1J2
ClinGenOR1J2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD26740
Chemical/Pharm GKB GenePA32080
Clinical trialOR1J2
Miscellaneous
canSAR (ICR)OR1J2 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR1J2
EVEXOR1J2
GoPubMedOR1J2
iHOPOR1J2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:32:52 CEST 2017

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