Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

OR1J4 (olfactory receptor family 1 subfamily J member 4)

Identity

Alias_namesolfactory receptor, family 1, subfamily J, member 4
Alias_symbol (synonym)HTPCRX01
HSHTPCRX01
Other aliasOR9-21
HGNC (Hugo) OR1J4
LocusID (NCBI) 26219
Atlas_Id 71215
Location 9q33.2  [Link to chromosome band 9q33]
Location_base_pair Starts at 122519141 and ends at 122520082 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OR1J4   8211
Cards
Entrez_Gene (NCBI)OR1J4  26219  olfactory receptor family 1 subfamily J member 4
AliasesHSHTPCRX01; HTPCRX01; OR9-21
GeneCards (Weizmann)OR1J4
Ensembl hg19 (Hinxton)ENSG00000239590 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000239590 [Gene_View]  chr9:122519141-122520082 [Contig_View]  OR1J4 [Vega]
ICGC DataPortalENSG00000239590
TCGA cBioPortalOR1J4
AceView (NCBI)OR1J4
Genatlas (Paris)OR1J4
WikiGenes26219
SOURCE (Princeton)OR1J4
Genetics Home Reference (NIH)OR1J4
Genomic and cartography
GoldenPath hg38 (UCSC)OR1J4  -     chr9:122519141-122520082 +  9q33.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OR1J4  -     9q33.2   [Description]    (hg19-Feb_2009)
EnsemblOR1J4 - 9q33.2 [CytoView hg19]  OR1J4 - 9q33.2 [CytoView hg38]
Mapping of homologs : NCBIOR1J4 [Mapview hg19]  OR1J4 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC131606 BC160137 X64979
RefSeq transcript (Entrez)NM_001004452
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OR1J4
Cluster EST : UnigeneHs.632679 [ NCBI ]
CGAP (NCI)Hs.632679
Alternative Splicing GalleryENSG00000239590
Gene ExpressionOR1J4 [ NCBI-GEO ]   OR1J4 [ EBI - ARRAY_EXPRESS ]   OR1J4 [ SEEK ]   OR1J4 [ MEM ]
Gene Expression Viewer (FireBrowse)OR1J4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)26219
GTEX Portal (Tissue expression)OR1J4
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NGS1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NGS1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NGS1
Splice isoforms : SwissVarQ8NGS1
PhosPhoSitePlusQ8NGS1
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OR1J4
DMDM Disease mutations26219
Blocks (Seattle)OR1J4
SuperfamilyQ8NGS1
Human Protein AtlasENSG00000239590
Peptide AtlasQ8NGS1
HPRD14918
IPIIPI00383941   
Protein Interaction databases
DIP (DOE-UCLA)Q8NGS1
IntAct (EBI)Q8NGS1
FunCoupENSG00000239590
BioGRIDOR1J4
STRING (EMBL)OR1J4
ZODIACOR1J4
Ontologies - Pathways
QuickGOQ8NGS1
Ontology : AmiGOG-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBIG-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Pathways : KEGGOlfactory transduction   
NDEx NetworkOR1J4
Atlas of Cancer Signalling NetworkOR1J4
Wikipedia pathwaysOR1J4
Orthology - Evolution
OrthoDB26219
GeneTree (enSembl)ENSG00000239590
Phylogenetic Trees/Animal Genes : TreeFamOR1J4
HOVERGENQ8NGS1
HOGENOMQ8NGS1
Homologs : HomoloGeneOR1J4
Homology/Alignments : Family Browser (UCSC)OR1J4
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR1J4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR1J4
dbVarOR1J4
ClinVarOR1J4
1000_GenomesOR1J4 
Exome Variant ServerOR1J4
ExAC (Exome Aggregation Consortium)OR1J4 (select the gene name)
Genetic variants : HAPMAP26219
Genomic Variants (DGV)OR1J4 [DGVbeta]
DECIPHEROR1J4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOR1J4 
Mutations
ICGC Data PortalOR1J4 
TCGA Data PortalOR1J4 
Broad Tumor PortalOR1J4
OASIS PortalOR1J4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR1J4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOR1J4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR1J4
DgiDB (Drug Gene Interaction Database)OR1J4
DoCM (Curated mutations)OR1J4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR1J4 (select a term)
intoGenOR1J4
Cancer3DOR1J4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenOR1J4
Genetic Testing Registry OR1J4
NextProtQ8NGS1 [Medical]
TSGene26219
GENETestsOR1J4
Target ValidationOR1J4
Huge Navigator OR1J4 [HugePedia]
snp3D : Map Gene to Disease26219
BioCentury BCIQOR1J4
ClinGenOR1J4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD26219
Chemical/Pharm GKB GenePA32081
Clinical trialOR1J4
Miscellaneous
canSAR (ICR)OR1J4 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR1J4
EVEXOR1J4
GoPubMedOR1J4
iHOPOR1J4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 13:32:53 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.