Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

OR1K1 (olfactory receptor family 1 subfamily K member 1)

Identity

Alias_namesolfactory receptor, family 1, subfamily K, member 1
Alias_symbol (synonym)hg99
MNAB
Other alias
HGNC (Hugo) OR1K1
LocusID (NCBI) 392392
Atlas_Id 71216
Location 9q33.2  [Link to chromosome band 9q33]
Location_base_pair Starts at 122800123 and ends at 122801073 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OR1K1   8212
Cards
Entrez_Gene (NCBI)OR1K1  392392  olfactory receptor family 1 subfamily K member 1
Aliaseshg99
GeneCards (Weizmann)OR1K1
Ensembl hg19 (Hinxton)ENSG00000165204 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000165204 [Gene_View]  chr9:122800123-122801073 [Contig_View]  OR1K1 [Vega]
ICGC DataPortalENSG00000165204
TCGA cBioPortalOR1K1
AceView (NCBI)OR1K1
Genatlas (Paris)OR1K1
WikiGenes392392
SOURCE (Princeton)OR1K1
Genetics Home Reference (NIH)OR1K1
Genomic and cartography
GoldenPath hg38 (UCSC)OR1K1  -     chr9:122800123-122801073 +  9q33.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OR1K1  -     9q33.2   [Description]    (hg19-Feb_2009)
EnsemblOR1K1 - 9q33.2 [CytoView hg19]  OR1K1 - 9q33.2 [CytoView hg38]
Mapping of homologs : NCBIOR1K1 [Mapview hg19]  OR1K1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC137033 BC137034
RefSeq transcript (Entrez)NM_080859
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OR1K1
Cluster EST : UnigeneHs.632681 [ NCBI ]
CGAP (NCI)Hs.632681
Alternative Splicing GalleryENSG00000165204
Gene ExpressionOR1K1 [ NCBI-GEO ]   OR1K1 [ EBI - ARRAY_EXPRESS ]   OR1K1 [ SEEK ]   OR1K1 [ MEM ]
Gene Expression Viewer (FireBrowse)OR1K1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)392392
GTEX Portal (Tissue expression)OR1K1
Human Protein AtlasENSG00000165204-OR1K1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NGR3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NGR3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NGR3
Splice isoforms : SwissVarQ8NGR3
PhosPhoSitePlusQ8NGR3
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OR1K1
DMDM Disease mutations392392
Blocks (Seattle)OR1K1
SuperfamilyQ8NGR3
Human Protein Atlas [tissue]ENSG00000165204-OR1K1 [tissue]
Peptide AtlasQ8NGR3
HPRD14919
IPIIPI00169096   
Protein Interaction databases
DIP (DOE-UCLA)Q8NGR3
IntAct (EBI)Q8NGR3
FunCoupENSG00000165204
BioGRIDOR1K1
STRING (EMBL)OR1K1
ZODIACOR1K1
Ontologies - Pathways
QuickGOQ8NGR3
Ontology : AmiGOtransmembrane signaling receptor activity  G-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBItransmembrane signaling receptor activity  G-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception  detection of chemical stimulus involved in sensory perception of smell  
Pathways : KEGGOlfactory transduction   
NDEx NetworkOR1K1
Atlas of Cancer Signalling NetworkOR1K1
Wikipedia pathwaysOR1K1
Orthology - Evolution
OrthoDB392392
GeneTree (enSembl)ENSG00000165204
Phylogenetic Trees/Animal Genes : TreeFamOR1K1
HOVERGENQ8NGR3
HOGENOMQ8NGR3
Homologs : HomoloGeneOR1K1
Homology/Alignments : Family Browser (UCSC)OR1K1
Gene fusions - Rearrangements
Fusion: Tumor Portal OR1K1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR1K1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR1K1
dbVarOR1K1
ClinVarOR1K1
1000_GenomesOR1K1 
Exome Variant ServerOR1K1
ExAC (Exome Aggregation Consortium)ENSG00000165204
GNOMAD BrowserENSG00000165204
Genetic variants : HAPMAP392392
Genomic Variants (DGV)OR1K1 [DGVbeta]
DECIPHEROR1K1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOR1K1 
Mutations
ICGC Data PortalOR1K1 
TCGA Data PortalOR1K1 
Broad Tumor PortalOR1K1
OASIS PortalOR1K1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR1K1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOR1K1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR1K1
DgiDB (Drug Gene Interaction Database)OR1K1
DoCM (Curated mutations)OR1K1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR1K1 (select a term)
intoGenOR1K1
Cancer3DOR1K1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenOR1K1
Genetic Testing Registry OR1K1
NextProtQ8NGR3 [Medical]
TSGene392392
GENETestsOR1K1
Target ValidationOR1K1
Huge Navigator OR1K1 [HugePedia]
snp3D : Map Gene to Disease392392
BioCentury BCIQOR1K1
ClinGenOR1K1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD392392
Chemical/Pharm GKB GenePA32083
Clinical trialOR1K1
Miscellaneous
canSAR (ICR)OR1K1 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR1K1
EVEXOR1K1
GoPubMedOR1K1
iHOPOR1K1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 12:20:12 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.