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OR1L1 (olfactory receptor family 1 subfamily L member 1)

Identity

Alias_namesOR1L2
olfactory receptor, family 1, subfamily L, member 1
Alias_symbol (synonym)OR9-C
Other aliasHG23
OR9-27
HGNC (Hugo) OR1L1
LocusID (NCBI) 26737
Atlas_Id 71217
Location 9q33.2  [Link to chromosome band 9q33]
Location_base_pair Starts at 122661716 and ends at 122662648 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OR1L1   8213
Cards
Entrez_Gene (NCBI)OR1L1  26737  olfactory receptor family 1 subfamily L member 1
AliasesHG23; OR1L2; OR9-27; OR9-C
GeneCards (Weizmann)OR1L1
Ensembl hg19 (Hinxton)ENSG00000173679 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000173679 [Gene_View]  chr9:122661716-122662648 [Contig_View]  OR1L1 [Vega]
ICGC DataPortalENSG00000173679
TCGA cBioPortalOR1L1
AceView (NCBI)OR1L1
Genatlas (Paris)OR1L1
WikiGenes26737
SOURCE (Princeton)OR1L1
Genetics Home Reference (NIH)OR1L1
Genomic and cartography
GoldenPath hg38 (UCSC)OR1L1  -     chr9:122661716-122662648 +  9q33.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OR1L1  -     9q33.2   [Description]    (hg19-Feb_2009)
EnsemblOR1L1 - 9q33.2 [CytoView hg19]  OR1L1 - 9q33.2 [CytoView hg38]
Mapping of homologs : NCBIOR1L1 [Mapview hg19]  OR1L1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC146390 BC153160
RefSeq transcript (Entrez)NM_001005236
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OR1L1
Cluster EST : UnigeneHs.567736 [ NCBI ]
CGAP (NCI)Hs.567736
Alternative Splicing GalleryENSG00000173679
Gene ExpressionOR1L1 [ NCBI-GEO ]   OR1L1 [ EBI - ARRAY_EXPRESS ]   OR1L1 [ SEEK ]   OR1L1 [ MEM ]
Gene Expression Viewer (FireBrowse)OR1L1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)26737
GTEX Portal (Tissue expression)OR1L1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NH94   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NH94  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NH94
Splice isoforms : SwissVarQ8NH94
PhosPhoSitePlusQ8NH94
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OR1L1
DMDM Disease mutations26737
Blocks (Seattle)OR1L1
SuperfamilyQ8NH94
Human Protein AtlasENSG00000173679
Peptide AtlasQ8NH94
HPRD14920
IPIIPI00376791   
Protein Interaction databases
DIP (DOE-UCLA)Q8NH94
IntAct (EBI)Q8NH94
FunCoupENSG00000173679
BioGRIDOR1L1
STRING (EMBL)OR1L1
ZODIACOR1L1
Ontologies - Pathways
QuickGOQ8NH94
Ontology : AmiGOG-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBIG-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Pathways : KEGGOlfactory transduction   
NDEx NetworkOR1L1
Atlas of Cancer Signalling NetworkOR1L1
Wikipedia pathwaysOR1L1
Orthology - Evolution
OrthoDB26737
GeneTree (enSembl)ENSG00000173679
Phylogenetic Trees/Animal Genes : TreeFamOR1L1
HOVERGENQ8NH94
HOGENOMQ8NH94
Homologs : HomoloGeneOR1L1
Homology/Alignments : Family Browser (UCSC)OR1L1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR1L1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR1L1
dbVarOR1L1
ClinVarOR1L1
1000_GenomesOR1L1 
Exome Variant ServerOR1L1
ExAC (Exome Aggregation Consortium)OR1L1 (select the gene name)
Genetic variants : HAPMAP26737
Genomic Variants (DGV)OR1L1 [DGVbeta]
DECIPHEROR1L1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOR1L1 
Mutations
ICGC Data PortalOR1L1 
TCGA Data PortalOR1L1 
Broad Tumor PortalOR1L1
OASIS PortalOR1L1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR1L1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOR1L1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR1L1
DgiDB (Drug Gene Interaction Database)OR1L1
DoCM (Curated mutations)OR1L1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR1L1 (select a term)
intoGenOR1L1
Cancer3DOR1L1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenOR1L1
Genetic Testing Registry OR1L1
NextProtQ8NH94 [Medical]
TSGene26737
GENETestsOR1L1
Target ValidationOR1L1
Huge Navigator OR1L1 [HugePedia]
snp3D : Map Gene to Disease26737
BioCentury BCIQOR1L1
ClinGenOR1L1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD26737
Chemical/Pharm GKB GenePA32084
Clinical trialOR1L1
Miscellaneous
canSAR (ICR)OR1L1 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR1L1
EVEXOR1L1
GoPubMedOR1L1
iHOPOR1L1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:33:57 CEST 2017

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