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OR1L3 (olfactory receptor, family 1, subfamily L, member 3)

Identity

Alias_namesolfactory receptor, family 1, subfamily L, member 3
Alias_symbol (synonym)OR9-D
Other aliasOR9-28
HGNC (Hugo) OR1L3
LocusID (NCBI) 26735
Atlas_Id 71218
Location 9q33.2  [Link to chromosome band 9q33]
Location_base_pair Starts at 125437409 and ends at 125438383 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OR1L3   8215
Cards
Entrez_Gene (NCBI)OR1L3  26735  olfactory receptor, family 1, subfamily L, member 3
AliasesOR9-28; OR9-D
GeneCards (Weizmann)OR1L3
Ensembl hg19 (Hinxton)ENSG00000171481 [Gene_View]  chr9:125437409-125438383 [Contig_View]  OR1L3 [Vega]
Ensembl hg38 (Hinxton)ENSG00000171481 [Gene_View]  chr9:125437409-125438383 [Contig_View]  OR1L3 [Vega]
ICGC DataPortalENSG00000171481
TCGA cBioPortalOR1L3
AceView (NCBI)OR1L3
Genatlas (Paris)OR1L3
WikiGenes26735
SOURCE (Princeton)OR1L3
Genetics Home Reference (NIH)OR1L3
Genomic and cartography
GoldenPath hg19 (UCSC)OR1L3  -     chr9:125437409-125438383 +  9q33.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)OR1L3  -     9q33.2   [Description]    (hg38-Dec_2013)
EnsemblOR1L3 - 9q33.2 [CytoView hg19]  OR1L3 - 9q33.2 [CytoView hg38]
Mapping of homologs : NCBIOR1L3 [Mapview hg19]  OR1L3 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC136857 BC136859
RefSeq transcript (Entrez)NM_001005234
RefSeq genomic (Entrez)NC_000009 NC_018920 NT_008470 NW_004929366
Consensus coding sequences : CCDS (NCBI)OR1L3
Cluster EST : UnigeneHs.626839 [ NCBI ]
CGAP (NCI)Hs.626839
Alternative Splicing GalleryENSG00000171481
Gene ExpressionOR1L3 [ NCBI-GEO ]   OR1L3 [ EBI - ARRAY_EXPRESS ]   OR1L3 [ SEEK ]   OR1L3 [ MEM ]
Gene Expression Viewer (FireBrowse)OR1L3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)26735
GTEX Portal (Tissue expression)OR1L3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NH93   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NH93  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NH93
Splice isoforms : SwissVarQ8NH93
PhosPhoSitePlusQ8NH93
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OR1L3
DMDM Disease mutations26735
Blocks (Seattle)OR1L3
SuperfamilyQ8NH93
Human Protein AtlasENSG00000171481
Peptide AtlasQ8NH93
HPRD14921
IPIIPI00185234   
Protein Interaction databases
DIP (DOE-UCLA)Q8NH93
IntAct (EBI)Q8NH93
FunCoupENSG00000171481
BioGRIDOR1L3
STRING (EMBL)OR1L3
ZODIACOR1L3
Ontologies - Pathways
QuickGOQ8NH93
Ontology : AmiGOG-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception  detection of chemical stimulus involved in sensory perception of smell  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBIG-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception  detection of chemical stimulus involved in sensory perception of smell  detection of chemical stimulus involved in sensory perception of smell  
Pathways : KEGGOlfactory transduction   
NDEx NetworkOR1L3
Atlas of Cancer Signalling NetworkOR1L3
Wikipedia pathwaysOR1L3
Orthology - Evolution
OrthoDB26735
GeneTree (enSembl)ENSG00000171481
Phylogenetic Trees/Animal Genes : TreeFamOR1L3
HOVERGENQ8NH93
HOGENOMQ8NH93
Homologs : HomoloGeneOR1L3
Homology/Alignments : Family Browser (UCSC)OR1L3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR1L3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR1L3
dbVarOR1L3
ClinVarOR1L3
1000_GenomesOR1L3 
Exome Variant ServerOR1L3
ExAC (Exome Aggregation Consortium)OR1L3 (select the gene name)
Genetic variants : HAPMAP26735
Genomic Variants (DGV)OR1L3 [DGVbeta]
DECIPHER (Syndromes)9:125437409-125438383  ENSG00000171481
CONAN: Copy Number AnalysisOR1L3 
Mutations
ICGC Data PortalOR1L3 
TCGA Data PortalOR1L3 
Broad Tumor PortalOR1L3
OASIS PortalOR1L3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR1L3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOR1L3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR1L3
DgiDB (Drug Gene Interaction Database)OR1L3
DoCM (Curated mutations)OR1L3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR1L3 (select a term)
intoGenOR1L3
Cancer3DOR1L3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenOR1L3
Genetic Testing Registry OR1L3
NextProtQ8NH93 [Medical]
TSGene26735
GENETestsOR1L3
Huge Navigator OR1L3 [HugePedia]
snp3D : Map Gene to Disease26735
BioCentury BCIQOR1L3
ClinGenOR1L3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD26735
Chemical/Pharm GKB GenePA32085
Clinical trialOR1L3
Miscellaneous
canSAR (ICR)OR1L3 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR1L3
EVEXOR1L3
GoPubMedOR1L3
iHOPOR1L3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:36:13 CET 2017

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