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OR1L4 (olfactory receptor family 1 subfamily L member 4)

Identity

Alias_namesOR1L5
olfactory receptor, family 1, subfamily L, member 4
Alias_symbol (synonym)OR9-E
Other aliasOR9-29
OST046
HGNC (Hugo) OR1L4
LocusID (NCBI) 254973
Atlas_Id 71219
Location 9q33.2  [Link to chromosome band 9q33]
Location_base_pair Starts at 122723990 and ends at 122724925 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OR1L4   8216
Cards
Entrez_Gene (NCBI)OR1L4  254973  olfactory receptor family 1 subfamily L member 4
AliasesOR1L5; OR9-29; OR9-E; OST046
GeneCards (Weizmann)OR1L4
Ensembl hg19 (Hinxton)ENSG00000136939 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000136939 [Gene_View]  chr9:122723990-122724925 [Contig_View]  OR1L4 [Vega]
ICGC DataPortalENSG00000136939
TCGA cBioPortalOR1L4
AceView (NCBI)OR1L4
Genatlas (Paris)OR1L4
WikiGenes254973
SOURCE (Princeton)OR1L4
Genetics Home Reference (NIH)OR1L4
Genomic and cartography
GoldenPath hg38 (UCSC)OR1L4  -     chr9:122723990-122724925 +  9q33.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OR1L4  -     9q33.2   [Description]    (hg19-Feb_2009)
EnsemblOR1L4 - 9q33.2 [CytoView hg19]  OR1L4 - 9q33.2 [CytoView hg38]
Mapping of homologs : NCBIOR1L4 [Mapview hg19]  OR1L4 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001005235
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OR1L4
Cluster EST : UnigeneHs.626838 [ NCBI ]
CGAP (NCI)Hs.626838
Alternative Splicing GalleryENSG00000136939
Gene ExpressionOR1L4 [ NCBI-GEO ]   OR1L4 [ EBI - ARRAY_EXPRESS ]   OR1L4 [ SEEK ]   OR1L4 [ MEM ]
Gene Expression Viewer (FireBrowse)OR1L4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)254973
GTEX Portal (Tissue expression)OR1L4
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NGR5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NGR5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NGR5
Splice isoforms : SwissVarQ8NGR5
PhosPhoSitePlusQ8NGR5
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OR1L4
DMDM Disease mutations254973
Blocks (Seattle)OR1L4
SuperfamilyQ8NGR5
Human Protein AtlasENSG00000136939
Peptide AtlasQ8NGR5
HPRD14922
IPIIPI00303615   
Protein Interaction databases
DIP (DOE-UCLA)Q8NGR5
IntAct (EBI)Q8NGR5
FunCoupENSG00000136939
BioGRIDOR1L4
STRING (EMBL)OR1L4
ZODIACOR1L4
Ontologies - Pathways
QuickGOQ8NGR5
Ontology : AmiGOG-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBIG-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Pathways : KEGGOlfactory transduction   
NDEx NetworkOR1L4
Atlas of Cancer Signalling NetworkOR1L4
Wikipedia pathwaysOR1L4
Orthology - Evolution
OrthoDB254973
GeneTree (enSembl)ENSG00000136939
Phylogenetic Trees/Animal Genes : TreeFamOR1L4
HOVERGENQ8NGR5
HOGENOMQ8NGR5
Homologs : HomoloGeneOR1L4
Homology/Alignments : Family Browser (UCSC)OR1L4
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR1L4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR1L4
dbVarOR1L4
ClinVarOR1L4
1000_GenomesOR1L4 
Exome Variant ServerOR1L4
ExAC (Exome Aggregation Consortium)OR1L4 (select the gene name)
Genetic variants : HAPMAP254973
Genomic Variants (DGV)OR1L4 [DGVbeta]
DECIPHEROR1L4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOR1L4 
Mutations
ICGC Data PortalOR1L4 
TCGA Data PortalOR1L4 
Broad Tumor PortalOR1L4
OASIS PortalOR1L4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR1L4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOR1L4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR1L4
DgiDB (Drug Gene Interaction Database)OR1L4
DoCM (Curated mutations)OR1L4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR1L4 (select a term)
intoGenOR1L4
Cancer3DOR1L4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenOR1L4
Genetic Testing Registry OR1L4
NextProtQ8NGR5 [Medical]
TSGene254973
GENETestsOR1L4
Target ValidationOR1L4
Huge Navigator OR1L4 [HugePedia]
snp3D : Map Gene to Disease254973
BioCentury BCIQOR1L4
ClinGenOR1L4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD254973
Chemical/Pharm GKB GenePA32086
Clinical trialOR1L4
Miscellaneous
canSAR (ICR)OR1L4 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR1L4
EVEXOR1L4
GoPubMedOR1L4
iHOPOR1L4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:33:57 CEST 2017

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