Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

OR1L6 (olfactory receptor family 1 subfamily L member 6)

Identity

Alias_namesOR1L7
olfactory receptor, family 1, subfamily L, member 6
Other aliasHG16
OR1K1
OR9-30
HGNC (Hugo) OR1L6
LocusID (NCBI) 392390
Atlas_Id 71220
Location 9q33.2  [Link to chromosome band 9q33]
Location_base_pair Starts at 122749848 and ends at 122750783 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OR1L6   8218
Cards
Entrez_Gene (NCBI)OR1L6  392390  olfactory receptor family 1 subfamily L member 6
AliasesHG16; OR1K1; OR1L7; OR9-30
GeneCards (Weizmann)OR1L6
Ensembl hg19 (Hinxton)ENSG00000171459 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000171459 [Gene_View]  chr9:122749848-122750783 [Contig_View]  OR1L6 [Vega]
ICGC DataPortalENSG00000171459
TCGA cBioPortalOR1L6
AceView (NCBI)OR1L6
Genatlas (Paris)OR1L6
WikiGenes392390
SOURCE (Princeton)OR1L6
Genetics Home Reference (NIH)OR1L6
Genomic and cartography
GoldenPath hg38 (UCSC)OR1L6  -     chr9:122749848-122750783 +  9q33.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OR1L6  -     9q33.2   [Description]    (hg19-Feb_2009)
EnsemblOR1L6 - 9q33.2 [CytoView hg19]  OR1L6 - 9q33.2 [CytoView hg38]
Mapping of homologs : NCBIOR1L6 [Mapview hg19]  OR1L6 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001004453
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OR1L6
Cluster EST : UnigeneHs.553790 [ NCBI ]
CGAP (NCI)Hs.553790
Alternative Splicing GalleryENSG00000171459
Gene ExpressionOR1L6 [ NCBI-GEO ]   OR1L6 [ EBI - ARRAY_EXPRESS ]   OR1L6 [ SEEK ]   OR1L6 [ MEM ]
Gene Expression Viewer (FireBrowse)OR1L6 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)392390
GTEX Portal (Tissue expression)OR1L6
Human Protein AtlasENSG00000171459-OR1L6 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NGR2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NGR2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NGR2
Splice isoforms : SwissVarQ8NGR2
PhosPhoSitePlusQ8NGR2
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OR1L6
DMDM Disease mutations392390
Blocks (Seattle)OR1L6
SuperfamilyQ8NGR2
Human Protein Atlas [tissue]ENSG00000171459-OR1L6 [tissue]
Peptide AtlasQ8NGR2
HPRD17688
IPIIPI00376792   
Protein Interaction databases
DIP (DOE-UCLA)Q8NGR2
IntAct (EBI)Q8NGR2
FunCoupENSG00000171459
BioGRIDOR1L6
STRING (EMBL)OR1L6
ZODIACOR1L6
Ontologies - Pathways
QuickGOQ8NGR2
Ontology : AmiGOG-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBIG-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Pathways : KEGGOlfactory transduction   
NDEx NetworkOR1L6
Atlas of Cancer Signalling NetworkOR1L6
Wikipedia pathwaysOR1L6
Orthology - Evolution
OrthoDB392390
GeneTree (enSembl)ENSG00000171459
Phylogenetic Trees/Animal Genes : TreeFamOR1L6
HOVERGENQ8NGR2
HOGENOMQ8NGR2
Homologs : HomoloGeneOR1L6
Homology/Alignments : Family Browser (UCSC)OR1L6
Gene fusions - Rearrangements
Tumor Fusion PortalOR1L6
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR1L6 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR1L6
dbVarOR1L6
ClinVarOR1L6
1000_GenomesOR1L6 
Exome Variant ServerOR1L6
ExAC (Exome Aggregation Consortium)ENSG00000171459
GNOMAD BrowserENSG00000171459
Genetic variants : HAPMAP392390
Genomic Variants (DGV)OR1L6 [DGVbeta]
DECIPHEROR1L6 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOR1L6 
Mutations
ICGC Data PortalOR1L6 
TCGA Data PortalOR1L6 
Broad Tumor PortalOR1L6
OASIS PortalOR1L6 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR1L6  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOR1L6
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR1L6
DgiDB (Drug Gene Interaction Database)OR1L6
DoCM (Curated mutations)OR1L6 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR1L6 (select a term)
intoGenOR1L6
Cancer3DOR1L6(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETOR1L6
MedgenOR1L6
Genetic Testing Registry OR1L6
NextProtQ8NGR2 [Medical]
TSGene392390
GENETestsOR1L6
Target ValidationOR1L6
Huge Navigator OR1L6 [HugePedia]
snp3D : Map Gene to Disease392390
BioCentury BCIQOR1L6
ClinGenOR1L6
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD392390
Chemical/Pharm GKB GenePA32087
Clinical trialOR1L6
Miscellaneous
canSAR (ICR)OR1L6 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR1L6
EVEXOR1L6
GoPubMedOR1L6
iHOPOR1L6
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:20:27 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.