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OR1L8 (olfactory receptor, family 1, subfamily L, member 8)

Identity

Alias_namesolfactory receptor, family 1, subfamily L, member 8
Other aliasOR9-24
HGNC (Hugo) OR1L8
LocusID (NCBI) 138881
Atlas_Id 71221
Location 9q33.2  [Link to chromosome band 9q33]
Location_base_pair Starts at 125329827 and ends at 125330756 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OR1L8   15110
Cards
Entrez_Gene (NCBI)OR1L8  138881  olfactory receptor, family 1, subfamily L, member 8
AliasesOR9-24
GeneCards (Weizmann)OR1L8
Ensembl hg19 (Hinxton)ENSG00000171496 [Gene_View]  chr9:125329827-125330756 [Contig_View]  OR1L8 [Vega]
Ensembl hg38 (Hinxton)ENSG00000171496 [Gene_View]  chr9:125329827-125330756 [Contig_View]  OR1L8 [Vega]
ICGC DataPortalENSG00000171496
TCGA cBioPortalOR1L8
AceView (NCBI)OR1L8
Genatlas (Paris)OR1L8
WikiGenes138881
SOURCE (Princeton)OR1L8
Genetics Home Reference (NIH)OR1L8
Genomic and cartography
GoldenPath hg19 (UCSC)OR1L8  -     chr9:125329827-125330756 -  9q33.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)OR1L8  -     9q33.2   [Description]    (hg38-Dec_2013)
EnsemblOR1L8 - 9q33.2 [CytoView hg19]  OR1L8 - 9q33.2 [CytoView hg38]
Mapping of homologs : NCBIOR1L8 [Mapview hg19]  OR1L8 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC140910
RefSeq transcript (Entrez)NM_001004454
RefSeq genomic (Entrez)NC_000009 NC_018920 NT_008470 NW_004929366
Consensus coding sequences : CCDS (NCBI)OR1L8
Cluster EST : UnigeneHs.632695 [ NCBI ]
CGAP (NCI)Hs.632695
Alternative Splicing GalleryENSG00000171496
Gene ExpressionOR1L8 [ NCBI-GEO ]   OR1L8 [ EBI - ARRAY_EXPRESS ]   OR1L8 [ SEEK ]   OR1L8 [ MEM ]
Gene Expression Viewer (FireBrowse)OR1L8 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)138881
GTEX Portal (Tissue expression)OR1L8
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NGR8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NGR8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NGR8
Splice isoforms : SwissVarQ8NGR8
PhosPhoSitePlusQ8NGR8
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OR1L8
DMDM Disease mutations138881
Blocks (Seattle)OR1L8
SuperfamilyQ8NGR8
Human Protein AtlasENSG00000171496
Peptide AtlasQ8NGR8
HPRD14923
IPIIPI00169103   
Protein Interaction databases
DIP (DOE-UCLA)Q8NGR8
IntAct (EBI)Q8NGR8
FunCoupENSG00000171496
BioGRIDOR1L8
STRING (EMBL)OR1L8
ZODIACOR1L8
Ontologies - Pathways
QuickGOQ8NGR8
Ontology : AmiGOG-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception  detection of chemical stimulus involved in sensory perception of smell  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBIG-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception  detection of chemical stimulus involved in sensory perception of smell  detection of chemical stimulus involved in sensory perception of smell  
Pathways : KEGGOlfactory transduction   
NDEx NetworkOR1L8
Atlas of Cancer Signalling NetworkOR1L8
Wikipedia pathwaysOR1L8
Orthology - Evolution
OrthoDB138881
GeneTree (enSembl)ENSG00000171496
Phylogenetic Trees/Animal Genes : TreeFamOR1L8
HOVERGENQ8NGR8
HOGENOMQ8NGR8
Homologs : HomoloGeneOR1L8
Homology/Alignments : Family Browser (UCSC)OR1L8
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR1L8 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR1L8
dbVarOR1L8
ClinVarOR1L8
1000_GenomesOR1L8 
Exome Variant ServerOR1L8
ExAC (Exome Aggregation Consortium)OR1L8 (select the gene name)
Genetic variants : HAPMAP138881
Genomic Variants (DGV)OR1L8 [DGVbeta]
DECIPHER (Syndromes)9:125329827-125330756  ENSG00000171496
CONAN: Copy Number AnalysisOR1L8 
Mutations
ICGC Data PortalOR1L8 
TCGA Data PortalOR1L8 
Broad Tumor PortalOR1L8
OASIS PortalOR1L8 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR1L8  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOR1L8
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR1L8
DgiDB (Drug Gene Interaction Database)OR1L8
DoCM (Curated mutations)OR1L8 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR1L8 (select a term)
intoGenOR1L8
Cancer3DOR1L8(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenOR1L8
Genetic Testing Registry OR1L8
NextProtQ8NGR8 [Medical]
TSGene138881
GENETestsOR1L8
Huge Navigator OR1L8 [HugePedia]
snp3D : Map Gene to Disease138881
BioCentury BCIQOR1L8
ClinGenOR1L8
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD138881
Chemical/Pharm GKB GenePA32088
Clinical trialOR1L8
Miscellaneous
canSAR (ICR)OR1L8 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR1L8
EVEXOR1L8
GoPubMedOR1L8
iHOPOR1L8
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:36:13 CET 2017

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