Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

OR1M1 (olfactory receptor family 1 subfamily M member 1)

Identity

Alias_namesolfactory receptor, family 1, subfamily M, member 1
Alias_symbol (synonym)OR19-6
Other aliasOR19-5
HGNC (Hugo) OR1M1
LocusID (NCBI) 125963
Atlas_Id 71222
Location 19p13.2  [Link to chromosome band 19p13]
Location_base_pair Starts at 9093245 and ends at 9094186 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OR1M1   8220
Cards
Entrez_Gene (NCBI)OR1M1  125963  olfactory receptor family 1 subfamily M member 1
AliasesOR19-5; OR19-6
GeneCards (Weizmann)OR1M1
Ensembl hg19 (Hinxton)ENSG00000170929 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000170929 [Gene_View]  chr19:9093245-9094186 [Contig_View]  OR1M1 [Vega]
ICGC DataPortalENSG00000170929
TCGA cBioPortalOR1M1
AceView (NCBI)OR1M1
Genatlas (Paris)OR1M1
WikiGenes125963
SOURCE (Princeton)OR1M1
Genetics Home Reference (NIH)OR1M1
Genomic and cartography
GoldenPath hg38 (UCSC)OR1M1  -     chr19:9093245-9094186 +  19p13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OR1M1  -     19p13.2   [Description]    (hg19-Feb_2009)
EnsemblOR1M1 - 19p13.2 [CytoView hg19]  OR1M1 - 19p13.2 [CytoView hg38]
Mapping of homologs : NCBIOR1M1 [Mapview hg19]  OR1M1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC137551 BC137555
RefSeq transcript (Entrez)NM_001004456
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OR1M1
Cluster EST : UnigeneHs.553577 [ NCBI ]
CGAP (NCI)Hs.553577
Alternative Splicing GalleryENSG00000170929
Gene ExpressionOR1M1 [ NCBI-GEO ]   OR1M1 [ EBI - ARRAY_EXPRESS ]   OR1M1 [ SEEK ]   OR1M1 [ MEM ]
Gene Expression Viewer (FireBrowse)OR1M1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)125963
GTEX Portal (Tissue expression)OR1M1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NGA1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NGA1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NGA1
Splice isoforms : SwissVarQ8NGA1
PhosPhoSitePlusQ8NGA1
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OR1M1
DMDM Disease mutations125963
Blocks (Seattle)OR1M1
SuperfamilyQ8NGA1
Human Protein AtlasENSG00000170929
Peptide AtlasQ8NGA1
HPRD17689
IPIIPI00168959   IPI00941153   
Protein Interaction databases
DIP (DOE-UCLA)Q8NGA1
IntAct (EBI)Q8NGA1
FunCoupENSG00000170929
BioGRIDOR1M1
STRING (EMBL)OR1M1
ZODIACOR1M1
Ontologies - Pathways
QuickGOQ8NGA1
Ontology : AmiGOG-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBIG-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Pathways : KEGGOlfactory transduction   
NDEx NetworkOR1M1
Atlas of Cancer Signalling NetworkOR1M1
Wikipedia pathwaysOR1M1
Orthology - Evolution
OrthoDB125963
GeneTree (enSembl)ENSG00000170929
Phylogenetic Trees/Animal Genes : TreeFamOR1M1
HOVERGENQ8NGA1
HOGENOMQ8NGA1
Homologs : HomoloGeneOR1M1
Homology/Alignments : Family Browser (UCSC)OR1M1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR1M1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR1M1
dbVarOR1M1
ClinVarOR1M1
1000_GenomesOR1M1 
Exome Variant ServerOR1M1
ExAC (Exome Aggregation Consortium)OR1M1 (select the gene name)
Genetic variants : HAPMAP125963
Genomic Variants (DGV)OR1M1 [DGVbeta]
DECIPHEROR1M1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOR1M1 
Mutations
ICGC Data PortalOR1M1 
TCGA Data PortalOR1M1 
Broad Tumor PortalOR1M1
OASIS PortalOR1M1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR1M1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOR1M1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR1M1
DgiDB (Drug Gene Interaction Database)OR1M1
DoCM (Curated mutations)OR1M1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR1M1 (select a term)
intoGenOR1M1
Cancer3DOR1M1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenOR1M1
Genetic Testing Registry OR1M1
NextProtQ8NGA1 [Medical]
TSGene125963
GENETestsOR1M1
Target ValidationOR1M1
Huge Navigator OR1M1 [HugePedia]
snp3D : Map Gene to Disease125963
BioCentury BCIQOR1M1
ClinGenOR1M1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD125963
Chemical/Pharm GKB GenePA32089
Clinical trialOR1M1
Miscellaneous
canSAR (ICR)OR1M1 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR1M1
EVEXOR1M1
GoPubMedOR1M1
iHOPOR1M1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 31 15:33:58 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.