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OR1N1 (olfactory receptor family 1 subfamily N member 1)

Identity

Alias_namesOR1N3
olfactory receptor, family 1, subfamily N, member 1
Alias_symbol (synonym)OR1-26
Other aliasOR9-22
HGNC (Hugo) OR1N1
LocusID (NCBI) 138883
Atlas_Id 71223
Location 9q33.2  [Link to chromosome band 9q33]
Location_base_pair Starts at 122526358 and ends at 122527293 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
OR1N1 (9q33.2) / TMEM132A (11q12.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OR1N1   8221
Cards
Entrez_Gene (NCBI)OR1N1  138883  olfactory receptor family 1 subfamily N member 1
AliasesOR1-26; OR1N3; OR9-22
GeneCards (Weizmann)OR1N1
Ensembl hg19 (Hinxton)ENSG00000171505 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000171505 [Gene_View]  chr9:122526358-122527293 [Contig_View]  OR1N1 [Vega]
ICGC DataPortalENSG00000171505
TCGA cBioPortalOR1N1
AceView (NCBI)OR1N1
Genatlas (Paris)OR1N1
WikiGenes138883
SOURCE (Princeton)OR1N1
Genetics Home Reference (NIH)OR1N1
Genomic and cartography
GoldenPath hg38 (UCSC)OR1N1  -     chr9:122526358-122527293 -  9q33.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OR1N1  -     9q33.2   [Description]    (hg19-Feb_2009)
EnsemblOR1N1 - 9q33.2 [CytoView hg19]  OR1N1 - 9q33.2 [CytoView hg38]
Mapping of homologs : NCBIOR1N1 [Mapview hg19]  OR1N1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC156678
RefSeq transcript (Entrez)NM_012363
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OR1N1
Cluster EST : UnigeneHs.553604 [ NCBI ]
CGAP (NCI)Hs.553604
Alternative Splicing GalleryENSG00000171505
Gene ExpressionOR1N1 [ NCBI-GEO ]   OR1N1 [ EBI - ARRAY_EXPRESS ]   OR1N1 [ SEEK ]   OR1N1 [ MEM ]
Gene Expression Viewer (FireBrowse)OR1N1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)138883
GTEX Portal (Tissue expression)OR1N1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NGS0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NGS0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NGS0
Splice isoforms : SwissVarQ8NGS0
PhosPhoSitePlusQ8NGS0
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OR1N1
DMDM Disease mutations138883
Blocks (Seattle)OR1N1
SuperfamilyQ8NGS0
Human Protein AtlasENSG00000171505
Peptide AtlasQ8NGS0
HPRD14924
IPIIPI00377165   
Protein Interaction databases
DIP (DOE-UCLA)Q8NGS0
IntAct (EBI)Q8NGS0
FunCoupENSG00000171505
BioGRIDOR1N1
STRING (EMBL)OR1N1
ZODIACOR1N1
Ontologies - Pathways
QuickGOQ8NGS0
Ontology : AmiGOtransmembrane signaling receptor activity  G-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBItransmembrane signaling receptor activity  G-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception  detection of chemical stimulus involved in sensory perception of smell  
Pathways : KEGGOlfactory transduction   
NDEx NetworkOR1N1
Atlas of Cancer Signalling NetworkOR1N1
Wikipedia pathwaysOR1N1
Orthology - Evolution
OrthoDB138883
GeneTree (enSembl)ENSG00000171505
Phylogenetic Trees/Animal Genes : TreeFamOR1N1
HOVERGENQ8NGS0
HOGENOMQ8NGS0
Homologs : HomoloGeneOR1N1
Homology/Alignments : Family Browser (UCSC)OR1N1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR1N1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR1N1
dbVarOR1N1
ClinVarOR1N1
1000_GenomesOR1N1 
Exome Variant ServerOR1N1
ExAC (Exome Aggregation Consortium)OR1N1 (select the gene name)
Genetic variants : HAPMAP138883
Genomic Variants (DGV)OR1N1 [DGVbeta]
DECIPHEROR1N1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOR1N1 
Mutations
ICGC Data PortalOR1N1 
TCGA Data PortalOR1N1 
Broad Tumor PortalOR1N1
OASIS PortalOR1N1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR1N1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOR1N1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR1N1
DgiDB (Drug Gene Interaction Database)OR1N1
DoCM (Curated mutations)OR1N1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR1N1 (select a term)
intoGenOR1N1
Cancer3DOR1N1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenOR1N1
Genetic Testing Registry OR1N1
NextProtQ8NGS0 [Medical]
TSGene138883
GENETestsOR1N1
Target ValidationOR1N1
Huge Navigator OR1N1 [HugePedia]
snp3D : Map Gene to Disease138883
BioCentury BCIQOR1N1
ClinGenOR1N1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD138883
Chemical/Pharm GKB GenePA32090
Clinical trialOR1N1
Miscellaneous
canSAR (ICR)OR1N1 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR1N1
EVEXOR1N1
GoPubMedOR1N1
iHOPOR1N1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:32:54 CEST 2017

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