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OR1N2 (olfactory receptor family 1 subfamily N member 2)

Identity

Alias_namesolfactory receptor, family 1, subfamily N, member 2
Other aliasOR9-23
HGNC (Hugo) OR1N2
LocusID (NCBI) 138882
Atlas_Id 71224
Location 9q33.2  [Link to chromosome band 9q33]
Location_base_pair Starts at 122553170 and ends at 122554162 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OR1N2   15111
Cards
Entrez_Gene (NCBI)OR1N2  138882  olfactory receptor family 1 subfamily N member 2
AliasesOR9-23
GeneCards (Weizmann)OR1N2
Ensembl hg19 (Hinxton)ENSG00000171501 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000171501 [Gene_View]  chr9:122553170-122554162 [Contig_View]  OR1N2 [Vega]
ICGC DataPortalENSG00000171501
TCGA cBioPortalOR1N2
AceView (NCBI)OR1N2
Genatlas (Paris)OR1N2
WikiGenes138882
SOURCE (Princeton)OR1N2
Genetics Home Reference (NIH)OR1N2
Genomic and cartography
GoldenPath hg38 (UCSC)OR1N2  -     chr9:122553170-122554162 +  9q33.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OR1N2  -     9q33.2   [Description]    (hg19-Feb_2009)
EnsemblOR1N2 - 9q33.2 [CytoView hg19]  OR1N2 - 9q33.2 [CytoView hg38]
Mapping of homologs : NCBIOR1N2 [Mapview hg19]  OR1N2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC137182 BC137183
RefSeq transcript (Entrez)NM_001004457
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OR1N2
Cluster EST : UnigeneHs.632682 [ NCBI ]
CGAP (NCI)Hs.632682
Alternative Splicing GalleryENSG00000171501
Gene ExpressionOR1N2 [ NCBI-GEO ]   OR1N2 [ EBI - ARRAY_EXPRESS ]   OR1N2 [ SEEK ]   OR1N2 [ MEM ]
Gene Expression Viewer (FireBrowse)OR1N2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)138882
GTEX Portal (Tissue expression)OR1N2
Human Protein AtlasENSG00000171501-OR1N2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NGR9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NGR9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NGR9
Splice isoforms : SwissVarQ8NGR9
PhosPhoSitePlusQ8NGR9
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OR1N2
DMDM Disease mutations138882
Blocks (Seattle)OR1N2
SuperfamilyQ8NGR9
Human Protein Atlas [tissue]ENSG00000171501-OR1N2 [tissue]
Peptide AtlasQ8NGR9
HPRD14925
IPIIPI00303622   
Protein Interaction databases
DIP (DOE-UCLA)Q8NGR9
IntAct (EBI)Q8NGR9
FunCoupENSG00000171501
BioGRIDOR1N2
STRING (EMBL)OR1N2
ZODIACOR1N2
Ontologies - Pathways
QuickGOQ8NGR9
Ontology : AmiGOtransmembrane signaling receptor activity  G-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBItransmembrane signaling receptor activity  G-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception  detection of chemical stimulus involved in sensory perception of smell  
Pathways : KEGGOlfactory transduction   
NDEx NetworkOR1N2
Atlas of Cancer Signalling NetworkOR1N2
Wikipedia pathwaysOR1N2
Orthology - Evolution
OrthoDB138882
GeneTree (enSembl)ENSG00000171501
Phylogenetic Trees/Animal Genes : TreeFamOR1N2
HOVERGENQ8NGR9
HOGENOMQ8NGR9
Homologs : HomoloGeneOR1N2
Homology/Alignments : Family Browser (UCSC)OR1N2
Gene fusions - Rearrangements
Fusion: Tumor Portal OR1N2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR1N2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR1N2
dbVarOR1N2
ClinVarOR1N2
1000_GenomesOR1N2 
Exome Variant ServerOR1N2
ExAC (Exome Aggregation Consortium)ENSG00000171501
GNOMAD BrowserENSG00000171501
Genetic variants : HAPMAP138882
Genomic Variants (DGV)OR1N2 [DGVbeta]
DECIPHEROR1N2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOR1N2 
Mutations
ICGC Data PortalOR1N2 
TCGA Data PortalOR1N2 
Broad Tumor PortalOR1N2
OASIS PortalOR1N2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR1N2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOR1N2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR1N2
DgiDB (Drug Gene Interaction Database)OR1N2
DoCM (Curated mutations)OR1N2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR1N2 (select a term)
intoGenOR1N2
Cancer3DOR1N2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenOR1N2
Genetic Testing Registry OR1N2
NextProtQ8NGR9 [Medical]
TSGene138882
GENETestsOR1N2
Target ValidationOR1N2
Huge Navigator OR1N2 [HugePedia]
snp3D : Map Gene to Disease138882
BioCentury BCIQOR1N2
ClinGenOR1N2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD138882
Chemical/Pharm GKB GenePA32091
Clinical trialOR1N2
Miscellaneous
canSAR (ICR)OR1N2 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR1N2
EVEXOR1N2
GoPubMedOR1N2
iHOPOR1N2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 12:20:14 CET 2017

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