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OR1S1 (olfactory receptor, family 1, subfamily S, member 1 (gene/pseudogene))

Identity

Alias_namesolfactory receptor, family 1, subfamily S, member 1 (gene/pseudogene)
Alias_symbol (synonym)OST034
Other aliasOR11-232
HGNC (Hugo) OR1S1
LocusID (NCBI) 219959
Atlas_Id 71226
Location 11q12.1  [Link to chromosome band 11q12]
Location_base_pair Starts at 57982217 and ends at 57983194 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OR1S1   8227
Cards
Entrez_Gene (NCBI)OR1S1  219959  olfactory receptor, family 1, subfamily S, member 1 (gene/pseudogene)
AliasesOR11-232; OST034
GeneCards (Weizmann)OR1S1
Ensembl hg19 (Hinxton)ENSG00000172774 [Gene_View]  chr11:57982217-57983194 [Contig_View]  OR1S1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000172774 [Gene_View]  chr11:57982217-57983194 [Contig_View]  OR1S1 [Vega]
ICGC DataPortalENSG00000172774
TCGA cBioPortalOR1S1
AceView (NCBI)OR1S1
Genatlas (Paris)OR1S1
WikiGenes219959
SOURCE (Princeton)OR1S1
Genetics Home Reference (NIH)OR1S1
Genomic and cartography
GoldenPath hg19 (UCSC)OR1S1  -     chr11:57982217-57983194 +  11q12.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)OR1S1  -     11q12.1   [Description]    (hg38-Dec_2013)
EnsemblOR1S1 - 11q12.1 [CytoView hg19]  OR1S1 - 11q12.1 [CytoView hg38]
Mapping of homologs : NCBIOR1S1 [Mapview hg19]  OR1S1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001004458
RefSeq genomic (Entrez)NC_000011 NC_018922 NT_167190 NW_004929380
Consensus coding sequences : CCDS (NCBI)OR1S1
Cluster EST : UnigeneHs.553645 [ NCBI ]
CGAP (NCI)Hs.553645
Alternative Splicing GalleryENSG00000172774
Gene ExpressionOR1S1 [ NCBI-GEO ]   OR1S1 [ EBI - ARRAY_EXPRESS ]   OR1S1 [ SEEK ]   OR1S1 [ MEM ]
Gene Expression Viewer (FireBrowse)OR1S1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)219959
GTEX Portal (Tissue expression)OR1S1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NH92   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NH92  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NH92
Splice isoforms : SwissVarQ8NH92
PhosPhoSitePlusQ8NH92
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OR1S1
DMDM Disease mutations219959
Blocks (Seattle)OR1S1
SuperfamilyQ8NH92
Human Protein AtlasENSG00000172774
Peptide AtlasQ8NH92
HPRD17690
IPIIPI00303764   
Protein Interaction databases
DIP (DOE-UCLA)Q8NH92
IntAct (EBI)Q8NH92
FunCoupENSG00000172774
BioGRIDOR1S1
STRING (EMBL)OR1S1
ZODIACOR1S1
Ontologies - Pathways
QuickGOQ8NH92
Ontology : AmiGOtransmembrane signaling receptor activity  G-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBItransmembrane signaling receptor activity  G-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception  detection of chemical stimulus involved in sensory perception of smell  
Pathways : KEGGOlfactory transduction   
NDEx NetworkOR1S1
Atlas of Cancer Signalling NetworkOR1S1
Wikipedia pathwaysOR1S1
Orthology - Evolution
OrthoDB219959
GeneTree (enSembl)ENSG00000172774
Phylogenetic Trees/Animal Genes : TreeFamOR1S1
HOVERGENQ8NH92
HOGENOMQ8NH92
Homologs : HomoloGeneOR1S1
Homology/Alignments : Family Browser (UCSC)OR1S1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR1S1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR1S1
dbVarOR1S1
ClinVarOR1S1
1000_GenomesOR1S1 
Exome Variant ServerOR1S1
ExAC (Exome Aggregation Consortium)OR1S1 (select the gene name)
Genetic variants : HAPMAP219959
Genomic Variants (DGV)OR1S1 [DGVbeta]
DECIPHER (Syndromes)11:57982217-57983194  ENSG00000172774
CONAN: Copy Number AnalysisOR1S1 
Mutations
ICGC Data PortalOR1S1 
TCGA Data PortalOR1S1 
Broad Tumor PortalOR1S1
OASIS PortalOR1S1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR1S1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOR1S1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR1S1
DgiDB (Drug Gene Interaction Database)OR1S1
DoCM (Curated mutations)OR1S1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR1S1 (select a term)
intoGenOR1S1
Cancer3DOR1S1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenOR1S1
Genetic Testing Registry OR1S1
NextProtQ8NH92 [Medical]
TSGene219959
GENETestsOR1S1
Huge Navigator OR1S1 [HugePedia]
snp3D : Map Gene to Disease219959
BioCentury BCIQOR1S1
ClinGenOR1S1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD219959
Chemical/Pharm GKB GenePA32098
Clinical trialOR1S1
Miscellaneous
canSAR (ICR)OR1S1 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR1S1
EVEXOR1S1
GoPubMedOR1S1
iHOPOR1S1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:36:14 CET 2017

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