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OR1S1 (olfactory receptor family 1 subfamily S member 1 (gene/pseudogene))

Identity

Alias (NCBI)OR11-232
OST034
HGNC (Hugo) OR1S1
HGNC Alias symbOST034
HGNC Previous nameolfactory receptor, family 1, subfamily S, member 1 (gene/pseudogene)
LocusID (NCBI) 219959
Atlas_Id 71226
Location 11q12.1  [Link to chromosome band 11q12]
Location_base_pair Starts at 58214745 and ends at 58215722 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

Nomenclature
HGNC (Hugo)OR1S1   8227
Cards
Entrez_Gene (NCBI)OR1S1    olfactory receptor family 1 subfamily S member 1 (gene/pseudogene)
AliasesOR11-232; OST034
GeneCards (Weizmann)OR1S1
Ensembl hg19 (Hinxton)ENSG00000280204 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000280204 [Gene_View]  ENSG00000280204 [Sequence]  chr11:58214745-58215722 [Contig_View]  OR1S1 [Vega]
ICGC DataPortalENSG00000280204
TCGA cBioPortalOR1S1
AceView (NCBI)OR1S1
Genatlas (Paris)OR1S1
SOURCE (Princeton)OR1S1
Genetics Home Reference (NIH)OR1S1
Genomic and cartography
GoldenPath hg38 (UCSC)OR1S1  -     chr11:58214745-58215722 +  11q12.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OR1S1  -     11q12.1   [Description]    (hg19-Feb_2009)
GoldenPathOR1S1 - 11q12.1 [CytoView hg19]  OR1S1 - 11q12.1 [CytoView hg38]
ImmunoBaseENSG00000280204
genome Data Viewer NCBIOR1S1 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001004458
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OR1S1
Alternative Splicing GalleryENSG00000280204
Gene ExpressionOR1S1 [ NCBI-GEO ]   OR1S1 [ EBI - ARRAY_EXPRESS ]   OR1S1 [ SEEK ]   OR1S1 [ MEM ]
Gene Expression Viewer (FireBrowse)OR1S1 [ Firebrowse - Broad ]
GenevisibleExpression of OR1S1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)219959
GTEX Portal (Tissue expression)OR1S1
Human Protein AtlasENSG00000280204-OR1S1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NH92   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NH92  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NH92
Splice isoforms : SwissVarQ8NH92
PhosPhoSitePlusQ8NH92
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)7tm_4 (PF13853)   
Domain families : Pfam (NCBI)pfam13853   
Conserved Domain (NCBI)OR1S1
Blocks (Seattle)OR1S1
SuperfamilyQ8NH92
Human Protein Atlas [tissue]ENSG00000280204-OR1S1 [tissue]
Peptide AtlasQ8NH92
HPRD17690
IPIIPI00303764   
Protein Interaction databases
DIP (DOE-UCLA)Q8NH92
IntAct (EBI)Q8NH92
BioGRIDOR1S1
STRING (EMBL)OR1S1
ZODIACOR1S1
Ontologies - Pathways
QuickGOQ8NH92
Ontology : AmiGOG protein-coupled receptor activity  olfactory receptor activity  plasma membrane  G protein-coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBIG protein-coupled receptor activity  olfactory receptor activity  plasma membrane  G protein-coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
NDEx NetworkOR1S1
Atlas of Cancer Signalling NetworkOR1S1
Wikipedia pathwaysOR1S1
Orthology - Evolution
OrthoDB219959
GeneTree (enSembl)ENSG00000280204
Phylogenetic Trees/Animal Genes : TreeFamOR1S1
HOGENOMQ8NH92
Homologs : HomoloGeneOR1S1
Homology/Alignments : Family Browser (UCSC)OR1S1
Gene fusions - Rearrangements
Fusion : QuiverOR1S1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR1S1 [hg38]
dbVarOR1S1
ClinVarOR1S1
MonarchOR1S1
1000_GenomesOR1S1 
Exome Variant ServerOR1S1
GNOMAD BrowserENSG00000280204
Varsome BrowserOR1S1
Genomic Variants (DGV)OR1S1 [DGVbeta]
DECIPHEROR1S1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOR1S1 
Mutations
ICGC Data PortalOR1S1 
TCGA Data PortalOR1S1 
Broad Tumor PortalOR1S1
OASIS PortalOR1S1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR1S1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DOR1S1
Mutations and Diseases : HGMDOR1S1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR1S1
DgiDB (Drug Gene Interaction Database)OR1S1
DoCM (Curated mutations)OR1S1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR1S1 (select a term)
intoGenOR1S1
Cancer3DOR1S1(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETOR1S1
MedgenOR1S1
Genetic Testing Registry OR1S1
NextProtQ8NH92 [Medical]
GENETestsOR1S1
Target ValidationOR1S1
Huge Navigator OR1S1 [HugePedia]
ClinGenOR1S1
Clinical trials, drugs, therapy
MyCancerGenomeOR1S1
Protein Interactions : CTD
Pharm GKB GenePA32098
Clinical trialOR1S1
Miscellaneous
canSAR (ICR)OR1S1 (select the gene name)
HarmonizomeOR1S1
DataMed IndexOR1S1
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR1S1
EVEXOR1S1
GoPubMedOR1S1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sat Dec 5 17:20:20 CET 2020

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