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OR1S2 (olfactory receptor family 1 subfamily S member 2)

Identity

Alias_namesolfactory receptor, family 1, subfamily S, member 2
Other aliasOR11-231
HGNC (Hugo) OR1S2
LocusID (NCBI) 219958
Atlas_Id 71227
Location 11q12.1  [Link to chromosome band 11q12]
Location_base_pair Starts at 58203204 and ends at 58204181 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OR1S2   15141
Cards
Entrez_Gene (NCBI)OR1S2  219958  olfactory receptor family 1 subfamily S member 2
AliasesOR11-231
GeneCards (Weizmann)OR1S2
Ensembl hg19 (Hinxton)ENSG00000197887 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000197887 [Gene_View]  chr11:58203204-58204181 [Contig_View]  OR1S2 [Vega]
ICGC DataPortalENSG00000197887
TCGA cBioPortalOR1S2
AceView (NCBI)OR1S2
Genatlas (Paris)OR1S2
WikiGenes219958
SOURCE (Princeton)OR1S2
Genetics Home Reference (NIH)OR1S2
Genomic and cartography
GoldenPath hg38 (UCSC)OR1S2  -     chr11:58203204-58204181 -  11q12.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OR1S2  -     11q12.1   [Description]    (hg19-Feb_2009)
EnsemblOR1S2 - 11q12.1 [CytoView hg19]  OR1S2 - 11q12.1 [CytoView hg38]
Mapping of homologs : NCBIOR1S2 [Mapview hg19]  OR1S2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001004459
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OR1S2
Cluster EST : UnigeneHs.553644 [ NCBI ]
CGAP (NCI)Hs.553644
Alternative Splicing GalleryENSG00000197887
Gene ExpressionOR1S2 [ NCBI-GEO ]   OR1S2 [ EBI - ARRAY_EXPRESS ]   OR1S2 [ SEEK ]   OR1S2 [ MEM ]
Gene Expression Viewer (FireBrowse)OR1S2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)219958
GTEX Portal (Tissue expression)OR1S2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NGQ3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NGQ3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NGQ3
Splice isoforms : SwissVarQ8NGQ3
PhosPhoSitePlusQ8NGQ3
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OR1S2
DMDM Disease mutations219958
Blocks (Seattle)OR1S2
SuperfamilyQ8NGQ3
Human Protein AtlasENSG00000197887
Peptide AtlasQ8NGQ3
HPRD14927
IPIIPI00169084   
Protein Interaction databases
DIP (DOE-UCLA)Q8NGQ3
IntAct (EBI)Q8NGQ3
FunCoupENSG00000197887
BioGRIDOR1S2
STRING (EMBL)OR1S2
ZODIACOR1S2
Ontologies - Pathways
QuickGOQ8NGQ3
Ontology : AmiGOtransmembrane signaling receptor activity  G-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBItransmembrane signaling receptor activity  G-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception  detection of chemical stimulus involved in sensory perception of smell  
Pathways : KEGGOlfactory transduction   
NDEx NetworkOR1S2
Atlas of Cancer Signalling NetworkOR1S2
Wikipedia pathwaysOR1S2
Orthology - Evolution
OrthoDB219958
GeneTree (enSembl)ENSG00000197887
Phylogenetic Trees/Animal Genes : TreeFamOR1S2
HOVERGENQ8NGQ3
HOGENOMQ8NGQ3
Homologs : HomoloGeneOR1S2
Homology/Alignments : Family Browser (UCSC)OR1S2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR1S2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR1S2
dbVarOR1S2
ClinVarOR1S2
1000_GenomesOR1S2 
Exome Variant ServerOR1S2
ExAC (Exome Aggregation Consortium)OR1S2 (select the gene name)
Genetic variants : HAPMAP219958
Genomic Variants (DGV)OR1S2 [DGVbeta]
DECIPHEROR1S2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOR1S2 
Mutations
ICGC Data PortalOR1S2 
TCGA Data PortalOR1S2 
Broad Tumor PortalOR1S2
OASIS PortalOR1S2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR1S2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOR1S2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR1S2
DgiDB (Drug Gene Interaction Database)OR1S2
DoCM (Curated mutations)OR1S2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR1S2 (select a term)
intoGenOR1S2
Cancer3DOR1S2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenOR1S2
Genetic Testing Registry OR1S2
NextProtQ8NGQ3 [Medical]
TSGene219958
GENETestsOR1S2
Target ValidationOR1S2
Huge Navigator OR1S2 [HugePedia]
snp3D : Map Gene to Disease219958
BioCentury BCIQOR1S2
ClinGenOR1S2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD219958
Chemical/Pharm GKB GenePA32099
Clinical trialOR1S2
Miscellaneous
canSAR (ICR)OR1S2 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR1S2
EVEXOR1S2
GoPubMedOR1S2
iHOPOR1S2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:32:54 CEST 2017

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